BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG12RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1298 0.0
>3x_Contig1706
Length = 16303
Score = 1298 bits (655), Expect = 0.0
Identities = 736/758 (97%), Gaps = 4/758 (0%)
Strand = Plus / Plus
Query: 44 gcttgctaagattcttcgtcatatatataccacaagatgtggtatatcccaacatatcat 103
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcttgctaagattcttcgtcattgatataccacaagatgtggtatatcccaacatatcat 360
Query: 104 caatttggtttctgattgtgttagtagaattacttgctaagcacataaggacatcatccc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caatttggtttctgattgtgttagtagaattacttgctaagcacataaggacatcatccc 420
Query: 164 aatcctcaaataagggcctattctgtgaattgaatacctctccactgaactgttttttga 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 421 aatcctcaaataagggcctattctgtgaattgaatacctctccactgaactgaatgctga 480
Query: 224 gtttagttggtaaactgggtaaatggtcatttaaatcgtaccttccatcctggaaaatac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtttagttggtaaactgggtaaatggtcatttaaatcgtaccttccatcctggaaaatac 540
Query: 284 ccctaatatcagcaaaatcggtataggaatcatccatgagaagttcataaaataatttgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccctaatatcagcaaaatcggtataggaatcatccatgagaagttcataaaataatttgc 600
Query: 344 gtcccaattctatgaaagcttcgtccacactggctttctcaactaaatcgtattcatctt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtcccaattctatgaaagcttcgtccacactggctttctcaactaaatcgtattcatctt 660
Query: 404 gaaataatttgatgagtttgcgactttctcttctgtacggttctaaggcaactttatagt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaaataatttgatgagtttgcgactttctcttctgtacggttctaaggcaactttatagt 720
Query: 464 ttgttggacttaactttttactctcgtcttctacccatgatccgcacccatcatggtact 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttgttggacttaactttttactctcgtcttctacccatgatccgcacccatcatggtact 780
Query: 524 gccaatagtcttcccctttacggaaaacagctgtgtgtatcggaatgattntatcacact 583
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 781 gccaatagtcttcccctttacggaaaacagctgtgtgtatcggaatgattttatcacact 840
Query: 584 tttttatcgcatcaagtatgctttccatgcgggacacattatactttcgagctgcataaa 643
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 841 tttttatcgcatcaagtatgctctccatgcgggacacattatactttcgagctgcataag 900
Query: 644 aaacggctaaaatactagtccattggactgcaactaccggatcatcccttgaaaaacccg 703
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 901 aaacggctaaaatactagtccattgtactgcaactaccggatcatcccttgaaaaaccgc 960
Query: 704 atcgtacctgtttctacttgtgcaaaaaa-gcattgacataaatgtgtgcaatgcatgcc 762
|||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||| |
Sbjct: 961 atcgtacctg-ttctacctgtgcaaaaaaggcattgacatcaatgtgtgcaatgcatg-c 1018
Query: 763 tatgggaaacagaaagctcttctctttggtcattcaaa 800
|| ||| | ||||||||||||||||| ||||||||||
Sbjct: 1019 taatggagaaagaaagctcttctcttt-gtcattcaaa 1055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6768
Number of Sequences: 1807
Number of extensions: 6768
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)