BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH03FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1552 0.0
>3x_Contig1652
Length = 14842
Score = 1552 bits (783), Expect = 0.0
Identities = 812/818 (99%), Gaps = 3/818 (0%)
Strand = Plus / Minus
Query: 87 taatttctt-acaatttctacgcttgcatcgatctcctctacaataccagtcgcagctat 145
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11935 taatttcttcacaatttctacgcttgcatcgatctcctctacaataccagtcgcagctat 11876
Query: 146 tctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggtatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11875 tctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggtatt 11816
Query: 206 tggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtatactt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11815 tggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtatactt 11756
Query: 266 caacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaacg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11755 caacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaacg 11696
Query: 326 tctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11695 tctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaacg 11636
Query: 386 atgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11635 atgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctcc 11576
Query: 446 cataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcgaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11575 cataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcgaa 11516
Query: 506 gacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggagt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11515 gacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggagt 11456
Query: 566 catagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgtaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11455 catagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgtaa 11396
Query: 626 ttcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttccat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395 ttcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttccat 11336
Query: 686 ttcgaattgtaaccttaaatttctc-ttttttgcggcattcaattcacgctcttcatcct 744
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11335 ttcgaattgtaacctt-aatttctctttttttgcggcattcaattcacgctcttcatcct 11277
Query: 745 gngtcaaatccttcttttcttcttcttcgaaatcagcgaacgattcgttgctatcagatt 804
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11276 gggtcaaatccttcttttcttcttcttcgaaatcagcgaacgattcgttgctatcagatt 11217
Query: 805 cttcatctcctgcagcagaattctcctccttcttatctgggttttcaggctcagcttcta 864
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 11216 cttcatctcctgcagcagaattctcctccttctcatctgtgttttcaggctcagcttcta 11157
Query: 865 agtcctcaaaatcaccgtatacttcatcttcatcatcg 902
||||||||||||||||||||||||||||||||||||||
Sbjct: 11156 agtcctcaaaatcaccgtatacttcatcttcatcatcg 11119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8163
Number of Sequences: 1807
Number of extensions: 8163
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)