BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH03RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig805 1318 0.0
>3x_Contig805
Length = 3584
Score = 1318 bits (665), Expect = 0.0
Identities = 777/815 (95%)
Strand = Plus / Minus
Query: 71 aagtgttatgaaagaaccctattaaggatctgatgcattctatgattctgacaacttgaa 130
||||||||||| ||||| |||||||||| ||||||||| ||||||| ||| || ||| |
Sbjct: 1826 aagtgttatgatagaacaatattaaggatatgatgcattatatgattatgaaaaattgta 1767
Query: 131 acttggtgaagataaaattgatgatcttctctcgaccaacattaatttggttgggattcg 190
| |||||||||||| |||||||| | |||| | | ||||||||||||||||||||| |||
Sbjct: 1766 aattggtgaagatataattgatgttattcttttgtccaacattaatttggttgggaatcg 1707
Query: 191 aagttgttgcatttttcagaagtgcagcctcatgcttgtcttgtttgtcttggatcttga 250
|||||||||||||||||||||||||||| | |||| |||| |||||||||||| | ||||
Sbjct: 1706 aagttgttgcatttttcagaagtgcagcattatgcatgtcatgtttgtcttggtttttga 1647
Query: 251 tgaaccttgaaagcctttctaagtctgccttcaaagaatttgagcaaatatgagaaatta 310
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 tgatccttgtaagcatttctaagtctgccttcaaagaatttgagcaaatatgagaaatta 1587
Query: 311 taggacaaccggggaaattctctggttccaatttttttagccctgactcatgatgtatat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 taggacaaccggggaaattctctggttccaatttttttagccctgactcatgatgtatat 1527
Query: 371 taagtataatgtaccaataatgaaacaagaaggtggtaagaacctgaggattctgtaggt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 taagtataatgtaccaataatgaaacaagaaggtggtaagaacctgaggattctgtaggt 1467
Query: 431 atgagatcatgatggggaaagctttttttgtttcttgtgtcataacatcaccatattcag 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 atgagatcatgatggggaaagctttttttgtttcttgtgtcataacatcaccatattcag 1407
Query: 491 tattaccaaactcttctatgatgtcctgtgtatacttagattgaggtacaccttcatcaa 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 tattaccaaactcttctatgatgtcctgtgtatacttagattgaggtacaccttcatcaa 1347
Query: 551 gaatagcaaattgcttacttctgncaggtagtaaactcactccttctatattntttatgt 610
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1346 gaatagcaaattgcttacttctgcaaggtagtaaactcactccttctatattttttatgt 1287
Query: 611 caaatcttcctctggaaatgaacttcacaacttcgaagtcatagtgtagttcatcattca 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 caaatcttcctctggaaatgaacttcacaacttcgaagtcatagtgtagttcatcattca 1227
Query: 671 aatagcataatgcaaatgcaatgattttacctattaacggtgttaatagtgcagtataac 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 aatagcataatgcaaatgcaatgattttacctattaacggtgttaatagtgcagtataac 1167
Query: 731 gttttagaaactgtagaatggtagactcagtattggtgtttgccatttgagcagctgtat 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 gttttagaaactgtagaatggtagactcagtattggtgtttgccatttgagcagctgtat 1107
Query: 791 ttcttacctcttaaaggtccccccttttttctgagtttaaaaccaacctgttggtcaccc 850
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 1106 ttcttacctctaaaaggtccgccctttttctagagtttaaaaccaacctgttggtcaccc 1047
Query: 851 atggtacatttaaaagtaagtggtccaaataaatt 885
|| ||||| ||||||||||||||| | ||||||||
Sbjct: 1046 atcgtacagttaaaagtaagtggtacgaataaatt 1012
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7696
Number of Sequences: 1807
Number of extensions: 7696
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)