BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH04FM1.SCF screened BAC_end
(836 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 591 e-169
>3x_Contig1803
Length = 52241
Score = 591 bits (298), Expect = e-169
Identities = 368/386 (95%), Gaps = 4/386 (1%)
Strand = Plus / Minus
Query: 87 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48818 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 48759
Query: 147 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48758 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 48699
Query: 207 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48698 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 48639
Query: 267 ccaactatagacagatgggtactctca-cctcacctacggtttactgcaaattagagcat 325
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 48638 ccaactatagacagatgggtactctcaccctcacctacggtttactgcaaattagagcat 48579
Query: 326 tgtgcaagttc-tcaacttcactt-atttataggatgctg-taaagacactattacgaac 382
||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 48578 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 48519
Query: 383 tgatcatcaggatattgggaccgtaccccatcttaccgtagttccaacaataaaggtttg 442
||||||||| |||| ||| ||||||| | |||| ||||||||| | |||||| |||||||
Sbjct: 48518 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 48459
Query: 443 cgtttaccttccggaatttacgttcc 468
|||| || | |||||||||||||||
Sbjct: 48458 cgttgacactacggaatttacgttcc 48433
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,480
Number of Sequences: 1807
Number of extensions: 25480
Number of successful extensions: 2627
Number of sequences better than 1.0e-20: 1
length of query: 836
length of database: 10,358,551
effective HSP length: 16
effective length of query: 820
effective length of database: 10,329,639
effective search space: 8470303980
effective search space used: 8470303980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)