BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH04RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1385 1170 0.0
>3x_Contig1385
Length = 5361
Score = 1170 bits (590), Expect = 0.0
Identities = 667/690 (96%), Gaps = 2/690 (0%)
Strand = Plus / Plus
Query: 61 tcgacggcgttctttcaaatttggggcaacagcagaagatgcaatcactctaccaccatt 120
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 tcgacggc-ttctttcaaagttggggcaacagcagaagatgcaatcactctaccaccatt 3985
Query: 121 agtgtacacttttccgttatcagatttcgtgccagcatggaaaatgtaggtatcagttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 agtgtacacttttccgttatcagatttcgtgccagcatggaaaatgtaggtatcagttgg 4045
Query: 181 aatcttcgaagaatcaaccgtaatctcgtctcccttcttgtatgactctgggtagccacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4046 aatcttcgaagaatcaaccgtaatctcgtctcccttcttgtatgactctgggtagccacc 4105
Query: 241 agcagctaaaactacagtagtagcatagcagttgtccttgattttgatgtcaactgaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4106 agcagctaaaactacagtagtagcatagcagttgtccttgattttgatgtcaactgaatc 4165
Query: 301 caatctatgttcagcagctgctaaaaagacttgagccaaatcggtgtcttcagtcaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4166 caatctatgttcagcagctgctaaaaagacttgagccaaatcggtgtcttcagtcaacaa 4225
Query: 361 tggcaagactgtttgcgtttctgggtcaccaaatctaacattgtactctaataccttggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4226 tggcaagactgtttgcgtttctgggtcaccaaatctaacattgtactctaataccttggg 4285
Query: 421 accgttcttagtcaagatgataccagtaaacaagacaccgacaaatggcaatttgtcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4286 accgttcttagtcaagatgataccagtaaacaagacaccgacaaatggcaatttgtcctt 4345
Query: 481 tctcataccatcaatacttggtttgacaatagtcttatcaatttgttccaacaactttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 tctcataccatcaatacttggtttgacaatagtcttatcaatttgttccaacaactttgg 4405
Query: 541 agtagcaacaggtgccggagcattaagcacccattccaccagtgttcaaaccggtgtcat 600
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 4406 agtagcaacaggtgccggagca-taagcacccataccaccagtgttcaaaccggtgtcat 4464
Query: 601 tttcaccaatttttttatggtcttgggctgggggcaggttaaaagttgagtaaccctctg 660
||||||||||| | ||||||||||||||||| || |||||||| ||||||||| ||||
Sbjct: 4465 tttcaccaattctcttatggtcttgggctggtggtaggttaaagtatgagtaaccgtctg 4524
Query: 661 agattgtcaagatggaaaattcatctcctttcaagaattctttattgacaacgcttttaa 720
|||||||||||||||| | ||||||||||| ||||||||||| | ||||||||||||||
Sbjct: 4525 agattgtcaagatggagatttcatctccttccaagaattcttcaatgacaacgcttttac 4584
Query: 721 cacccgcaccgaattgtcttttccccatga 750
|| | ||||||||||||||| | ||||||
Sbjct: 4585 cagcgtcaccgaattgtctttccaccatga 4614
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7091
Number of Sequences: 1807
Number of extensions: 7091
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)