BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH05FM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1682 1516 0.0
>3x_Contig1682
Length = 16889
Score = 1516 bits (765), Expect = 0.0
Identities = 781/785 (99%), Gaps = 1/785 (0%)
Strand = Plus / Plus
Query: 83 gctttaagacacaacacccatttctttattgaattcttcgctatggatcttttgacccat 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14794 gctttaagacacaacacccatttctttattgaattcttcgctatggatcttttgacccat 14853
Query: 143 aacggtgaagtcgttggtgttatggcttacaaccaagaagacggtaccatccacagattc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14854 aacggtgaagtcgttggtgttatggcttacaaccaagaagacggtaccatccacagattc 14913
Query: 203 cgtgctcacaagaccattatcgctactggtgggtacggtcgtgcctacttctcttgtaca 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14914 cgtgctcacaagaccattatcgctactggtgggtacggtcgtgcctacttctcttgtaca 14973
Query: 263 tctgctcatacttgtacaggtgatggttatgctatggtttctcgtgctggtttcccattg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14974 tctgctcatacttgtacaggtgatggttatgctatggtttctcgtgctggtttcccattg 15033
Query: 323 caagatttggaatttattcaattccatccttccggtatctacggttccggttgtttgatc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15034 caagatttggaatttattcaattccatccttccggtatctacggttccggttgtttgatc 15093
Query: 383 actgaaggtgctcgtggtgagggtggtttcttggttaactctgaaggtgaacgtttcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094 actgaaggtgctcgtggtgagggtggtttcttggttaactctgaaggtgaacgtttcatg 15153
Query: 443 gaacgttatgctccaactgctaaggatttagcttgtagagacgttgtttctcgtgccatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15154 gaacgttatgctccaactgctaaggatttagcttgtagagacgttgtttctcgtgccatc 15213
Query: 503 accatggaaatcagagaaggtagaggtgttggtccagaaaaggatcacatgttcttgcaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15214 accatggaaatcagagaaggtagaggtgttggtccagaaaaggatcacatgttcttgcaa 15273
Query: 563 ttgaaccatttgccaccttctgtgcttcatgaacgtttgccaggtatctctgaaactgca 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15274 ttgaaccatttgccaccttctgtgcttcatgaacgtttgccaggtatctctgaaactgca 15333
Query: 623 gccattttcgccggtgtcgatgtcactaaggaaccaattcctatcttacctactgtccat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15334 gccattttcgccggtgtcgatgtcactaaggaaccaattcctatcttacctactgtccat 15393
Query: 683 tataacatgggtggtattccaactaagtggaacggtgaagctttgactatcgatgaagaa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15394 tataacatgggtggtattccaactaagtggaacggtgaagctttgactatcgatgaagaa 15453
Query: 743 accgttgaagatgttctcatcccaggtctacttgcctgtggtgaagcagcttgtgtctct 802
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15454 accggtgaagatgttctcatcccaggtctacttgcctgtggtgaagcagcttgtgtctct 15513
Query: 803 gtttacggtgctaacaaattgggtgctaattccttgttagaatttggtcgtgttcggtcg 862
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 15514 gttcacggtgctaacagattgggtgctaattccttgttag-atttggtcgtgttcggtcg 15572
Query: 863 tgctg 867
|||||
Sbjct: 15573 tgctg 15577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5463
Number of Sequences: 1807
Number of extensions: 5463
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)