BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH05RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1753 1570 0.0
>3x_Contig1753
Length = 23959
Score = 1570 bits (792), Expect = 0.0
Identities = 843/856 (98%), Gaps = 3/856 (0%)
Strand = Plus / Minus
Query: 49 aatttttgggttcatctatatgaatcgattcatcgtttattttaattgtattctttttat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19638 aatttttgggttcatctatatgaatcgattcatcgtttattttaattgtattctttttat 19579
Query: 109 aagagtgtcaagtaaaaaaaagtgaaggagattagaaacacttcaagtgaacgatggatg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19578 aagagtgtcaagtaaaaaaaagtgaaggagattagaaacacttcaagtgaacgatggatg 19519
Query: 169 gaccagattcgtcgtattcttgctttgagatccacatttgttggaaagtggtcaaagagg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19518 gaccagattcgtcgtattcttgctttgagatccacatttgttggaaagtggtcaaagagg 19459
Query: 229 ccaaaatagaaccaccgatccagacagagtactttctttctggaggagcgatgatcttga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19458 ccaaaatagaaccaccgatccagacagagtactttctttctggaggagcgatgatcttga 19399
Query: 289 ccttcatagaagaaggagccaaggcggtaatttccttttgcattctttcagcaatacctg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19398 ccttcatagaagaaggagccaaggcggtaatttccttttgcattctttcagcaatacctg 19339
Query: 349 ggaacatggtggtaccaccggacatgacgatgttaccgtacaattcctttctgacatcaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19338 ggaacatggtggtaccaccggacatgacgatgttaccgtacaattcctttctgacatcaa 19279
Query: 409 catcacacttcatgatggagttgtaagtagtttggtcgataccagcagcttccaaactta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19278 catcacacttcatgatggagttgtaagtagtttggtcgataccagcagcttccaaactta 19219
Query: 469 gaacagatggatggaacaaagcttctggagctctgaatctttcgttaccgatagtgataa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19218 gaacagatggatggaacaaagcttctggagctctgaatctttcgttaccgatagtgataa 19159
Query: 529 cttggccatctggtaattcgtaagacttttcaacagcggatgattgagaagcagtttgca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19158 cttggccatctggtaattcgtaagacttttcaacagcggatgattgagaagcagtttgca 19099
Query: 589 tttcttgttcgaagtccaaagcgacgtaacatagcttttccttgatgtcacggacgattt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19098 tttcttgttcgaagtccaaagcgacgtaacatagcttttccttgatgtcacggacgattt 19039
Query: 649 ctctttcagcggtagtagagaaagagtaaccacgttcagccaagatcttcatcaagtagt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19038 ctctttcagcggtagtagagaaagagtaaccacgttcagccaagatcttcatcaagtagt 18979
Query: 709 cggtgatatctctaccagccaagtcgattctcaagatagcgtgaggcaaggagataccgg 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18978 cggtgatatctctaccagccaagtcgattctcaagatagcgtgaggcaaggagaaaccgg 18919
Query: 769 cgtatattgtaacaacgtgggtaacaccgtcaccagaa-ccaacacaataccagtggttc 827
|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 18918 cgtagattggaacaacgtgggtaacaccgtcaccagaatccaacacaataccagtggttc 18859
Query: 828 taccagaagagtacagggac-aaacagcttggatagaaac-tttaaggctgggacgttga 885
||||||||||||||| |||| |||||||||||||||| || | |||||||| |||||||
Sbjct: 18858 taccagaagagtacaaggacaaaacagcttggatagagacgtagaaggctggaacgttga 18799
Query: 886 aagtttcaaaccagat 901
||||||| ||| ||||
Sbjct: 18798 aagtttcgaacaagat 18783
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6664
Number of Sequences: 1807
Number of extensions: 6664
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)