BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 868 0.0
3x_Contig1604 186 5e-47
>3x_Contig1220
Length = 4729
Score = 868 bits (438), Expect = 0.0
Identities = 455/461 (98%)
Strand = Plus / Plus
Query: 51 ggttcggtggtggtgctgttttaactccttcttatttgtacgaggaagacgctaaattgt 110
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4269 ggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaattgt 4328
Query: 111 tccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaataca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4329 tccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaataca 4388
Query: 171 agaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccatttgtatcggtg 230
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4389 agaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggtatcggtg 4448
Query: 231 gtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttgaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 gtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttgaaa 4508
Query: 291 actgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatatgc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 actgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatatgc 4568
Query: 351 cttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaattca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 cttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaattca 4628
Query: 411 acctagtccttgacagaggtactcaattcggtttaagaactccaggatcccgtgtcgaaa 470
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4629 acctagtccttgacagaggtactcaattcggnttaagaactccaggatcccgtgtcgaaa 4688
Query: 471 gtattttgatgtctttgcctgtgactgcttcgtggttgtat 511
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4689 gtattttgatgtctttgcctgtgactgcttcgtgtttgtat 4729
>3x_Contig1604
Length = 15703
Score = 186 bits (94), Expect = 5e-47
Identities = 257/301 (85%), Gaps = 8/301 (2%)
Strand = Plus / Plus
Query: 624 tagtttcttatgatcttaatttcttacgcttcnaaaacaaagtcggtcgttagtaccata 683
|||||||| ||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 8 tagtttctaatgatcttaatttcttacgcttcaaaaacca-gtcggtcgttagtaccata 66
Query: 684 cagcgttgcacgaaatggttttgtccagccgtcgacaattcttttattttgcctggttca 743
|||||||||||||||||||| |||| |||||||||||| ||||||||||| || |||||
Sbjct: 67 cagcgttgcacgaaatggttctgtcacgccgtcgacaatacttttattttgtcttgttca 126
Query: 744 atcta-ttgtagatttattc-ttattttatcattgtgattcaaaagaattttattaaaac 801
||||| |||||||||||| | |||| ||| || | ||||||| ||||| ||| | ||||
Sbjct: 127 atctatttgtagatttatacattatatta-cactttgattcagaagaagtttcatcaaac 185
Query: 802 cttaacatctttttttttggagcttaagtaaaagcg-gatttaccttttattttttgaaa 860
| ||||| ||| |||| |||| ||| | |||||| ||| ||||||| || |||||||
Sbjct: 186 cctaacaacttccttttgcgagcctaa-tgaaagcgtgatctacctttcatcatttgaaa 244
Query: 861 gattaa-cagtggtttttagttgggcgagaaacaagtggcag-gattaaagccgaacatt 918
|||||| || |||||||| ||||||||| |||| |||||| |||||||||||||||||
Sbjct: 245 gattaagcatgcgtttttagctgggcgagagacaaatggcagcgattaaagccgaacatt 304
Query: 919 t 919
|
Sbjct: 305 t 305
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9098
Number of Sequences: 1807
Number of extensions: 9098
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)