BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC23ZH06RM1.SCF screened BAC_end (925 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1220 868 0.0 3x_Contig1604 186 5e-47 >3x_Contig1220 Length = 4729 Score = 868 bits (438), Expect = 0.0 Identities = 455/461 (98%) Strand = Plus / Plus Query: 51 ggttcggtggtggtgctgttttaactccttcttatttgtacgaggaagacgctaaattgt 110 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4269 ggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaattgt 4328 Query: 111 tccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaataca 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4329 tccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaataca 4388 Query: 171 agaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccatttgtatcggtg 230 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 4389 agaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggtatcggtg 4448 Query: 231 gtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttgaaa 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4449 gtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttgaaa 4508 Query: 291 actgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatatgc 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4509 actgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatatgc 4568 Query: 351 cttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaattca 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4569 cttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaattca 4628 Query: 411 acctagtccttgacagaggtactcaattcggtttaagaactccaggatcccgtgtcgaaa 470 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 4629 acctagtccttgacagaggtactcaattcggnttaagaactccaggatcccgtgtcgaaa 4688 Query: 471 gtattttgatgtctttgcctgtgactgcttcgtggttgtat 511 |||||||||||||||||||||||||||||||||| |||||| Sbjct: 4689 gtattttgatgtctttgcctgtgactgcttcgtgtttgtat 4729 >3x_Contig1604 Length = 15703 Score = 186 bits (94), Expect = 5e-47 Identities = 257/301 (85%), Gaps = 8/301 (2%) Strand = Plus / Plus Query: 624 tagtttcttatgatcttaatttcttacgcttcnaaaacaaagtcggtcgttagtaccata 683 |||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||| Sbjct: 8 tagtttctaatgatcttaatttcttacgcttcaaaaacca-gtcggtcgttagtaccata 66 Query: 684 cagcgttgcacgaaatggttttgtccagccgtcgacaattcttttattttgcctggttca 743 |||||||||||||||||||| |||| |||||||||||| ||||||||||| || ||||| Sbjct: 67 cagcgttgcacgaaatggttctgtcacgccgtcgacaatacttttattttgtcttgttca 126 Query: 744 atcta-ttgtagatttattc-ttattttatcattgtgattcaaaagaattttattaaaac 801 ||||| |||||||||||| | |||| ||| || | ||||||| ||||| ||| | |||| Sbjct: 127 atctatttgtagatttatacattatatta-cactttgattcagaagaagtttcatcaaac 185 Query: 802 cttaacatctttttttttggagcttaagtaaaagcg-gatttaccttttattttttgaaa 860 | ||||| ||| |||| |||| ||| | |||||| ||| ||||||| || ||||||| Sbjct: 186 cctaacaacttccttttgcgagcctaa-tgaaagcgtgatctacctttcatcatttgaaa 244 Query: 861 gattaa-cagtggtttttagttgggcgagaaacaagtggcag-gattaaagccgaacatt 918 |||||| || |||||||| ||||||||| |||| |||||| ||||||||||||||||| Sbjct: 245 gattaagcatgcgtttttagctgggcgagagacaaatggcagcgattaaagccgaacatt 304 Query: 919 t 919 | Sbjct: 305 t 305 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9098 Number of Sequences: 1807 Number of extensions: 9098 Number of successful extensions: 62 Number of sequences better than 1.0e-20: 2 length of query: 925 length of database: 10,358,551 effective HSP length: 16 effective length of query: 909 effective length of database: 10,329,639 effective search space: 9389641851 effective search space used: 9389641851 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)