BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH07FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1366 0.0
>3x_Contig1536
Length = 11572
Score = 1366 bits (689), Expect = 0.0
Identities = 772/793 (97%), Gaps = 5/793 (0%)
Strand = Plus / Minus
Query: 85 tcagaagggaaaaccaaacctgtgaaggtcttaatagtgggagtgcatggtttctttcca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3953 tcagaagggaaaaccaaacctgtgaaggtcttaatagtgggagtgcatggtttctttcca 3894
Query: 145 acaaagatgataagaccacttatcggagaaccaactggtacgtctacaaaatttatctca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3893 acaaagatgataagaccacttatcggagaaccaactggtacgtctacaaaatttatctca 3834
Query: 205 gaggcggaaacggttgttttgaggtggtttcacaagcatgatacacatgtagagataagc 264
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3833 gaggcggaaacggctgttttgaggtggtttcacaagcatgatacacatgtagagataagc 3774
Query: 265 aaaattgcattagagaaagaaggaaaggttttggacagagttgctttcttctttgatgtg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 aaaattgcattagagaaagaaggaaaggttttggacagagttgctttcttctttgatgtg 3714
Query: 325 ttaaagaaatggatcaatgagatcaacaaagcggatttcgtttattttgttgcacactct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 ttaaagaaatggatcaatgagatcaacaaagcggatttcgtttattttgttgcacactct 3654
Query: 385 caaggatgtcctgtgacaataattttgcttgcaaagttgatagaagctggcattattgat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 caaggatgtcctgtgacaataattttgcttgcaaagttgatagaagctggcattattgat 3594
Query: 445 attgataatataatcacatctgaggatccgccgatttcaataaaatcagatgataagaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 attgataatataatcacatctgaggatccgccgatttcaataaaatcagatgataagaaa 3534
Query: 505 aaaatcataagcattcttgcaatggccggtatcaacaatggaccattttacggtgctgac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 aaaatcataagcattcttgcaatggccggtatcaacaatggaccattttacggtgctgac 3474
Query: 565 caaactttttttgttaaagcgtactctgctattgagagcgattctttgaaagaacttttt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 caaactttttttgttaaagcgtactctgctattgagagcgattctttgaaagaacttttt 3414
Query: 625 gagttccaaaacttttattcagttctatcacaaaagttcatccagagtcttagaatttgc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 gagttccaaaacttttattcagttctatcacaaaagttcatccagagtcttagaatttgc 3354
Query: 685 attgctagtaacgttaaaatcgcatttgtaggatccactttacgatcagctggtcccact 744
|| |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 3353 atagctagtaacgttaaaatcgcatttgtaggatcca-ttaacgatcagctggtaccact 3295
Query: 745 ttattcttcaacctgccagttttgctcatcattcaaacatttttaa-gcaacttttgttg 803
||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 3294 ttattcttcaacctgccag-tttgctcatcatccaaacatatttaaggcaacttttgttg 3236
Query: 804 ataaagatttcaatacctccggcgttctttacc-gaaatgttagctttggaaacccctta 862
||||||| ||| | | ||||||||||| ||||| ||| ||||||| ||| ||||| ||||
Sbjct: 3235 ataaaga-ttccagaactccggcgttcattaccagaattgttagcattgcaaaccactta 3177
Query: 863 aaaaattttggtt 875
| |||| ||||||
Sbjct: 3176 ataaatcttggtt 3164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8891
Number of Sequences: 1807
Number of extensions: 8891
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)