BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH08FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1407 0.0
>3x_Contig1779
Length = 24855
Score = 1407 bits (710), Expect = 0.0
Identities = 757/769 (98%), Gaps = 4/769 (0%)
Strand = Plus / Plus
Query: 86 ttgaaagggttttcattgcagagcgaagcggattcttctgctactgtagagaagatcaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22467 ttgaaagggttttcattgcagagcgaagcggattcttctgctactgtagagaagatcaag 22526
Query: 146 gaggctattgatgtttgtgattcaagtgagtgcactggtgattgtgtcaatgaagacgca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22527 gaggctattgatgtttgtgattcaagtgagtgcactggtgattgtgtcaatgaagacgca 22586
Query: 206 gatgaaaaagatgcattacaaaaagatgagggaatctttgcgaagttgaaaattgaccat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22587 gatgaaaaagatgcattacaaaaagatgagggaatctttgcgaagttgaaaattgaccat 22646
Query: 266 gaacaacctttgtatggatcttcaacgacttctaaaatacattttatcattccgacatct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22647 gaacaacctttgtatggatcttcaacgacttctaaaatacattttatcattccgacatct 22706
Query: 326 caaactgattgggcgcatgatgcttgtatggaaaagccaggatccgttcaagctgtgatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22707 caaactgattgggcgcatgatgcttgtatggaaaagccaggatccgttcaagctgtgatg 22766
Query: 386 caaaaatggatcaatgctaatagtgacaagtactctgatattgaaagtgaaggtgagacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22767 caaaaatggatcaatgctaatagtgacaagtactctgatattgaaagtgaaggtgagacc 22826
Query: 446 attcgttgttcagtatcatctctaccgattgatttgttggatattgatgtcatgaagaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22827 attcgttgttcagtatcatctctaccgattgatttgttggatattgatgtcatgaagaat 22886
Query: 506 acaaagaatgatgttcttatctttccgcatttcttaaagataaaagcagtgaaatcagat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22887 acaaagaatgatgttcttatctttccgcatttcttaaagataaaagcagtgaaatcagat 22946
Query: 566 cttgttgctgagcttcttaatgaagttgtaccattacttttgaagaatgaacgtggaaca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22947 cttgttgctgagcttcttaatgaagttgtaccattacttttgaagaatgaacgtggaaca 23006
Query: 626 ctactagcgaaagattacattgaagaaattaaagacaactcgttcatccttttatgttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23007 ctactagcgaaagattacattgaagaaattaaagacaactcgttcatccttttatgttct 23066
Query: 686 catagaactagagataagagatgtggtatcacagctcctattcttgaaaaacacttttac 745
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 23067 catagaactagagataagagatgtggtatcacagctcctattctagaaaaacactttaac 23126
Query: 746 aaacatctacaacgccatcatctttacagagataacttagacttcagacctggtggtttg 805
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 23127 aaacatctacaacgccatcatctttacagagataactcagacttcagacctggtgg-ttg 23185
Query: 806 tcgggtgggctttattttaatctttttcggtggccacaaatttgctgcg 854
||| |||| |||| |||||| | |||||||||||||||||||||||
Sbjct: 23186 tcgtgtgg--cttatgttaatc-atgtcggtggccacaaatttgctgcg 23231
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7428
Number of Sequences: 1807
Number of extensions: 7428
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)