BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH08RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1118 1070 0.0
>3x_Contig1118
Length = 5540
Score = 1070 bits (540), Expect = 0.0
Identities = 630/656 (96%), Gaps = 3/656 (0%)
Strand = Plus / Plus
Query: 58 atctcatcatgtaagctactatcaaggaagctgatcttgatactccacattgacagtgga 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 atctcatcatgtaagctactatcaaggaagctgatcttgatactccacattgacagtgga 2046
Query: 118 ttagcaccttttttttgctggcataggcattctgtattagttctgttagttgtggtaggt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2047 ttagcaccttttttttgctggcataggcattctgtattagttctgttagttgtggtaggt 2106
Query: 178 ttttagtaatttgtgaggtatgagaccaagtaaaatgatattatcaaccttgcttggata 237
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 2107 ttttagtaatttgtgaggtatgagaccaagtaaaatgataatagcaaccttgcttggata 2166
Query: 238 gaggcagttgttccttgtagttggtaatctcctttgcaacgtttattattacgtcgtaat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2167 gaggcagttgttccttgtagttggtaatctcctttgcaacgtttattattacgtcgtaat 2226
Query: 298 ccattacttcttttaatgatggttcagaatacaaatatatgaaaggagggacgacaagta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2227 ccattacttcttttaatgatggttcagaatacaaatatatgaaaggagggacgacaagta 2286
Query: 358 acggtccactgggataatatttctctctgtatgattctgaatagctcggtgagtcttcat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2287 acggtccactgggataatatttctctctgtatgattctgaatagctcggtgagtcttcat 2346
Query: 418 cagaatgggtattgtatgggatgctcttcatatcattatcataatttgtagaggacatgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2347 cagaatgggtattgtatgggatgctcttcatatcattatcataatttgtagaggacatgg 2406
Query: 478 gcgtattttcttgaagaacccaataccgtgtcgtgcttttcattgaatcattactgggcg 537
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2407 gcgtattttcttgaagaacccaataccgtgtcgtgctttccattgaatcattactgggcg 2466
Query: 538 tctgtatctgaggtacacttgtcgcaattgtcgtggccctctcgcctattgtgaaatttg 597
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2467 tctgtatctgaagtacacttgtcgcaattgtcgtggccctc-ggcctattgtgaaatttg 2525
Query: 598 gtgttgattgttggaagtgtttggtttattgaaagccaggaaaaacttaaacaatttagg 657
||||||||||||||||||| ||||||||||||||| | | || || || || | | |||
Sbjct: 2526 gtgttgattgttggaagtg-ttggtttattgaaaggcgaggaagacgtagacga-tgagg 2583
Query: 658 ttgaaccggttgaattaaaacccgaactgccataaggtaattgttgtgtatagggt 713
|||| ||| ||||| ||| |||||||||||| | ||||||||| ||||| |||||
Sbjct: 2584 gtgaagcggctgaatcaaagcccgaactgccagacggtaattgtggtgtagagggt 2639
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7436
Number of Sequences: 1807
Number of extensions: 7436
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)