BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH10RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 1237 0.0
>3x_Contig1620
Length = 12263
Score = 1237 bits (624), Expect = 0.0
Identities = 720/744 (96%), Gaps = 6/744 (0%)
Strand = Plus / Plus
Query: 56 tctgacttccgtgttgcttcgtacaattttctagtggtggaatctctaactagtgatatt 115
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314 tctgacttccgtaaggcttcgtacaattttctagtggtggaatctctaactagtgatatt 6373
Query: 116 ggacgtgtgaacaattcattgaattgattttgcttgaatgaacccagacgatacaagaat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374 ggacgtgtgaacaattcattgaattgattttgcttgaatgaacccagacgatacaagaat 6433
Query: 176 tgtaattgctgctctgagaaagaatggacatctgcggcactgttttttttaggattaaac 235
|||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 6434 tgtaattgctgctctgagaaagaatggacatctgcggcactgatgttattaggattaaac 6493
Query: 236 atgggcagatcgacaaaagttgcatttttatgtaaattagccgttgcaacagctggttgc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6494 atgggcagatcgacaaaagttgcatttttatgtaaattagccgttgcaacagctggttgc 6553
Query: 296 catctcttatacatggaaccaggagtaattcttttggctgctgccttagttcctgattga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6554 catctcttatacatggaaccaggagtaattcttttggctgctgccttagttcctgattga 6613
Query: 356 gccttagcgaacccttgggctttcttcttagctgcagcctctactgcagcactgcaggag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6614 gccttagcgaacccttgggctttcttcttagctgcagcctctactgcagcactgcaggag 6673
Query: 416 aactgtctggtatgtattctcaacatgatcgaaatatatcttacgggtccggatatctct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6674 aactgtctggtatgtattctcaacatgatcgaaatatatcttacgggtccggatatctct 6733
Query: 476 aaaaagaagtgaaatccgtctcactaatatagcttcttttttactaaatcacacttctgt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6734 aaaaagaagtgaaatccgtctcactaatatagcttcttttttactaaatcacacttctgt 6793
Query: 536 aattattcttaaaaccaacacaaattgacttattaaagtggattatttcacgtagttctg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6794 aattattcttaaaaccaacacaaattgacttattaaagtggattatttcacgtagttctg 6853
Query: 596 ttattctttatctatgtcacttgaagtctgcctgctactgaagtagttcaaatttcgaaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6854 ttattctttatctatgtcacttgaagtctgcctgctactgaagtagttcaaatttcg-aa 6912
Query: 656 aatttttcagatattgaaaatcttaaagctttaagagaaaatacaatatacgtgtcacgt 715
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct: 6913 aatttttcagatattgaaatcattaaagc-ttaagagaaaataaaatatacgtgtcacgt 6971
Query: 716 gaaaacacttaaaaactatggaagtatttttttttaaagggaaaaaccaaaccacgcaat 775
|||||||| ||| ||||||||||||| | | | |||||||||| ||| ||| ||||||||
Sbjct: 6972 gaaaacac-taagaactatggaagta-tatctattaaagggaagaacgaaa-cacgcaat 7028
Query: 776 gctattaatgggggtcggacagaa 799
||||| ||| || |||||||||||
Sbjct: 7029 gctataaat-ggtgtcggacagaa 7051
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8697
Number of Sequences: 1807
Number of extensions: 8697
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)