BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC23ZH11FM1.SCF screened BAC_end (923 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1619 143 7e-34 >3x_Contig1619 Length = 7770 Score = 143 bits (72), Expect = 7e-34 Identities = 115/128 (89%), Gaps = 6/128 (4%) Strand = Plus / Plus Query: 172 ttataagaacgttcaacgactagataatgagttaggttaacaataatttatccacgagtg 231 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1283 ttataaaaacgttcaacgactagataatgagttaggttaacaataatttatccacgagcg 1342 Query: 232 cccaatattagataatattatatattatttaataatgacatagtctgaacaatatagtaa 291 |||||||| | || | |||| ||||| |||||||||||||||||||||||||| || Sbjct: 1343 cccaatatcaaat-agatta-----tatttgataatgacatagtctgaacaatatagaaa 1396 Query: 292 tatattga 299 |||||||| Sbjct: 1397 tatattga 1404 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,731 Number of Sequences: 1807 Number of extensions: 16731 Number of successful extensions: 1339 Number of sequences better than 1.0e-20: 1 length of query: 923 length of database: 10,358,551 effective HSP length: 16 effective length of query: 907 effective length of database: 10,329,639 effective search space: 9368982573 effective search space used: 9368982573 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)