BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZH12FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig925 1552 0.0
>3x_Contig925
Length = 3823
Score = 1552 bits (783), Expect = 0.0
Identities = 832/843 (98%), Gaps = 4/843 (0%)
Strand = Plus / Minus
Query: 93 cccccccctttgaatatgaaaacaaccttatactagatagaaaaggcaggtttttttcag 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3439 cccccccctttgaatatgaaaacaaccttatactagatagaaaaggcaggtttttttcag 3380
Query: 153 atcctctttagctgcgcttattgattccaaaatattagtaaactatagttactgtagagc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3379 atcctctttagctgcgcttattgattccaaaatattagtaaactatagttactgtagagc 3320
Query: 213 gtgcagtggtgctggtatgaccttttaacctggtgagatgttcatgaagatgagttagat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3319 gtgcagtggtgctggtatgaccttttaacctggtgagatgttcatgaagatgagttagat 3260
Query: 273 gtaaatccttatgatcgttgttttaatatcaaaaaactcaaaacgcgaaaacgcgaaact 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3259 gtaaatccttatgatcgttgttttaatatcaaaaaactcaaaacgcgaaaacgcgaaact 3200
Query: 333 ggtgttttggggagagttttcgggcccatttctggggaccggaaactggggatgcgatta 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3199 ggtgttttggggagagttttcgggcccatttctggggaccggaaactggggatgcgatta 3140
Query: 393 aaagacagtacagacagcactctcaaccgcagagacctcatatatagccataacgcccac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3139 aaagacagtacagacagcactctcaaccgcagagacctcatatatagccataacgcccac 3080
Query: 453 aaagggtttatagatgatctactggcccttcacaagctctaaatcgctgatacatgagga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3079 aaagggtttatagatgatctactggcccttcacaagctctaaatcgctgatacatgagga 3020
Query: 513 attgaccgatatttagccgtatcttgtctttaacccactttgttacccggccttttgccc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3019 attgaccgatatttagccgtatcttgtctttaacccactttgttacccggccttttgccc 2960
Query: 573 tttttccgtaatcatttgaccacttaatcattgaactatccaatcaagtcacttaacgat 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2959 tttttccgtaatcatttgaccacttaatcattgaactatccaatcaagtcacttaacgat 2900
Query: 633 gagtaacatcacttctgttcagtctctgtatacttaacttgtccatttgacgagtctccg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2899 gagtaacatcacttctgttcagtctctgtatacttaacttgtccatttgacgagtctccg 2840
Query: 693 acagctagctagactgttataataccaattgtccccgccatgtcagttctcagaccatta 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2839 acagctagctagactgttataataccaattgtccccgccatgtcagttctcagaccatta 2780
Query: 753 agattgttactactgggtgcacccggttctggttaaggtactcagacctcgaaactgttg 812
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2779 agattgttactactgggtgcacccggttctggtaaaggtactcagacctcgaaactgttg 2720
Query: 813 aaagaattcggatccatcaaagctatctcatcctggaga-ttgctacgtaaacagattga 871
|||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||
Sbjct: 2719 aaagaattcggatccatcaaggctatctcat-ctggagatttgctacgtaaacagattga 2661
Query: 872 acatggcacaccgtttagttttaatgccttcctcgtttattgagaaa-gccagttgttac 930
||||||||||||||| |||| | |||| ||||||| |||||||||| ||||||||||||
Sbjct: 2660 acatggcacaccgttaggtttaagtgcc-tcctcgtatattgagaaaggccagttgttac 2602
Query: 931 ccg 933
|||
Sbjct: 2601 ccg 2599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5059
Number of Sequences: 1807
Number of extensions: 5059
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)