BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA01FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig776 1473 0.0
>3x_Contig776
Length = 3521
Score = 1473 bits (743), Expect = 0.0
Identities = 784/794 (98%), Gaps = 3/794 (0%)
Strand = Plus / Plus
Query: 87 gcaatgttcccgtttaaatcgttttgaacaacgacaaaagcagcatttcccaaaagatcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2594 gcaatgttcccgtttaaatcgttttgaacaacgacaaaagcagcatttcccaaaagatcg 2653
Query: 147 aacaatttgacaagggattctgatgcttccaaaaactcggacgttgaaatcttgttatcc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2654 aacaatttgacaagggattctgatgcttccaaaaactcggacgttgaaatcttgttatcc 2713
Query: 207 cgatccacaggaactgtctcgaaagacatcttcatttcatcgaaaaaggttgacatggcg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 cgatccacaggaactgtctcgaaagacatcttcatttcatcgaaaaaggttgacatggcg 2773
Query: 267 ttctaaatttatatctggaaaagtgtcaagagcaaatgaaaggcacttcaaaccacaaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2774 ttctaaatttatatctggaaaagtgtcaagagcaaatgaaaggcacttcaaaccacaaaa 2833
Query: 327 tgatcaacaaatactatgcagttaatgttgcttagttgcttttatccgatgtattactaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2834 tgatcaacaaatactatgcagttaatgttgcttagttgcttttatccgatgtattactaa 2893
Query: 387 atgatgcacttttcagtgatgtggatacttgctcaatagttacttcaatattgatttgta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 atgatgcacttttcagtgatgtggatacttgctcaatagttacttcaatattgatttgta 2953
Query: 447 gtgtggcttatcacatgatggatgaattggaaataatatttcacgttgaatttccatatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 gtgtggcttatcacatgatggatgaattggaaataatatttcacgttgaatttccatatg 3013
Query: 507 tttacactggcaaagaaaattcgaaatttttcagatttcaaaacatcaacacgacaagac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 tttacactggcaaagaaaattcgaaatttttcagatttcaaaacatcaacacgacaagac 3073
Query: 567 aagaatgaacgaacacgacatactacaattaaatgttgtcttaaggaggatccattctga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 aagaatgaacgaacacgacatactacaattaaatgttgtcttaaggaggatccattctga 3133
Query: 627 gaat-ggaaatgaaccacttttctaggagtatatctttagttggatatgtttatgtttat 685
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 gaataggaaatgaaccacttttctaggagtatatctttagttggatatgtttatgtttat 3193
Query: 686 gaaaggtgttaattaatatatatttgtcatctgaatgagatatgcaagatattaacctct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 gaaaggtgttaattaatatatatttgtcatctgaatgagatatgcaagatattaacctct 3253
Query: 746 tccagcattcattctcttcagtctcaactttttagccatagacattgttttattggatac 805
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 3254 tccagcattcattctcttcagtctcaacttttcagccatagacattggtttattggatac 3313
Query: 806 gggagcattttgtgctggtgctggtgcttggggttggagtanaaagaacagggcttgaat 865
|||||| ||||||||||||||||||| ||||||||||||| || |||||||||| | ||
Sbjct: 3314 cggagcagtttgtgctggtgctggtgc-tggggttggagtagaaggaacagggctag-at 3371
Query: 866 ctagagctaccgtt 879
||||||||||||||
Sbjct: 3372 ctagagctaccgtt 3385
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8128
Number of Sequences: 1807
Number of extensions: 8128
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)