BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA01RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1423 0.0
>3x_Contig1791
Length = 39945
Score = 1423 bits (718), Expect = 0.0
Identities = 832/861 (96%), Gaps = 8/861 (0%)
Strand = Plus / Minus
Query: 48 cttagctccgtatgtatcaatttcagtactagtttttagacactctgatggctcaaaatc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332 cttagctccgtatgtatcaatttcagtactagtttttagacactctgatggctcaaaatc 19273
Query: 108 gatgaagtttcgtaaagtaatgctggtcaaagaatcattgataagatagtgataaggatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19272 gatgaagtttcgtaaagtaatgctggtcaaagaatcattgataagatagtgataaggatc 19213
Query: 168 gatatcttcaattgcaaatagagataacgaacttgatgtggaggacattgttcctgtagg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212 gatatcttcaattgcaaatagagataacgaacttgatgtggaggacattgttcctgtagg 19153
Query: 228 aagcgcagcgggcgttaaggaatactggtaggtggcaggattatttttgtttcctaagat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19152 aagcgcagcgggcgttaaggaatactggtaggtggcaggattatttttgtttcctaagat 19093
Query: 288 caagaagggtctctgggcaagccattggcttttgataattttaatcggagagtaggtttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19092 caagaagggtctctgggcaagccattggcttttgataattttaatcggagagtaggtttc 19033
Query: 348 aggaatcatatttaaggctttttcctgggaatttatactctcttcaacatcatagggtgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19032 aggaatcatatttaaggctttttcctgggaatttatactctcttcaacatcatagggtgg 18973
Query: 408 taaaaccgtagtcgggaattcttttgtggtgatgttctcataaagatattctatgtattc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18972 taaaaccgtagtcgggaattcttttgtggtgatgttctcataaagatattctatgtattc 18913
Query: 468 tctcggaaccatcttccctgagcactccgtatcactatgtatcaacttaacgaattctgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18912 tctcggaaccatcttccctgagcactccgtatcactatgtatcaacttaacgaattctgc 18853
Query: 528 cttagtgatcttttctttattatttggattgaagctgtcagtatggagcatcaacaaaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18852 cttagtgatcttttctttattatttggattgaagctgtcagtatggagcatcaacaaaga 18793
Query: 588 gtaggtaaggaagtataattgttcaatatccttccatattggctccgaattttctattct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18792 gtaggtaaggaagtataattgttcaatatccttccatattggctccgaattttctattct 18733
Query: 648 ttcggcattgcagtgctgtctatagtatgaaacgctgaagcatttcaagattctttcaat 707
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18732 ttcggcattgcagtgctgtctatagtatgaaacgctgaagcatttcaagaatctttcaat 18673
Query: 708 ctgttggcttttctttgggaagttcaagaaata-tagcactggtccgaatgataaat-tt 765
|||||||| ||||||||||||||||||| |||| |||||||| || |||||||||| |
Sbjct: 18672 ctgttggc-tttctttgggaagttcaaggaatagtagcactgttcgtaatgataaatcta 18614
Query: 766 atgggtgggttgaaaaaac-aattccttatccatgaattgttgttaacaggacattaaaa 824
|||| ||| |||||||| | |||||||||||||||||||||||| ||||||||| |||||
Sbjct: 18613 atggttggtttgaaaaatcaaattccttatccatgaattgttgtaaacaggacagtaaaa 18554
Query: 825 atgtatttttattcgcccattgttccaaagccaggttcctttttgatagactggttccaa 884
|||||| || || ||| ||| || ||||||| |||| | || ||||||||||| | |||
Sbjct: 18553 atgtatcttcatacgcgcatagtaccaaagcaaggtac--ttctgatagactgg-tacaa 18497
Query: 885 ttttcattagggtaatcatcc 905
||||||||| |||||||||||
Sbjct: 18496 ttttcatta-ggtaatcatcc 18477
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8464
Number of Sequences: 1807
Number of extensions: 8464
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)