BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA02FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1489 1445 0.0
>3x_Contig1489
Length = 10722
Score = 1445 bits (729), Expect = 0.0
Identities = 821/846 (97%), Gaps = 5/846 (0%)
Strand = Plus / Minus
Query: 87 atcctctagtggacaaggaaattctttccaaaaccatccacaatggatttgataaatatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 atcctctagtggacaaggaaattctttccaaaaccatccacaatggatttgataaatatg 1658
Query: 147 tgaggaccggtatcacagaatccccatcgaaggaaagcgggaaaatgtactccgttgtgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 tgaggaccggtatcacagaatccccatcgaaggaaagcgggaaaatgtactccgttgtgt 1598
Query: 207 ttaatcgatggtttgatattcagtcggaatttaatactcatgttcaaactgaacagttta 266
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 ttaatcgatggtttgatagtcagtcggaatttaatactcatgttcaaactgaacagttta 1538
Query: 267 atattgcattgtctcggaatagaaagcgtttgatgaaggaatacacgtttcactgttttt 326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1537 atattgcattgtctcggaatagaaagcgtttgatgaaggaatacacgtt-cactgttttt 1479
Query: 327 ccaaatttctctctaaagtattgcaaaatacaatatcattcacggaaagaaaacttgcat 386
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 ccaaatttctctctaaagtatagcaaaatacaatatcattcacggaaagaaaacttgcat 1419
Query: 387 tcacagatgaagagtttactgaagagctggaaaagctacaagaacaatatgaatcaccca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 tcacagatgaagagtttactgaagagctggaaaagctacaagaacaatatgaatcaccca 1359
Query: 447 tatacgccaaagatgaatctgaagataaaccatcttatattgacaatgctgaagatactg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 tatacgccaaagatgaatctgaagataaaccatcttatattgacaatgctgaagatactg 1299
Query: 507 ctcaaaaagagagtatggatccaacgaatccatacaacctaccattaggacctgacggat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 ctcaaaaagagagtatggatccaacgaatccatacaacctaccattaggacctgacggat 1239
Query: 567 ttcctatacctcgctggctcatcaaagtccaaggtttagatgtgaaatatgtttgcgaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 ttcctatacctcgctggctcatcaaagtccaaggtttagatgtgaaatatgtttgcgaga 1179
Query: 627 tctgcggtaatcaaatattatcatgggcgtagagaattcgagatacatttcccactgaaa 686
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1178 tctgcggtaatcaaata-tatcatgggcgtagagaattcgagaaacatttcccactgaaa 1120
Query: 687 aaacattcagaaggtttgaaatctttangcataactccttctcttgcattcaaagatgtc 746
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1119 aaacattcagaaggtttgaaatctttaggcataactccttctcttgcattcaaagatgtc 1060
Query: 747 actactatagtagaggtgacagagctatggaaagcatttgcagcaaagagtacactaaag 806
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1059 actactatagtagaggtgacagagctatggaaagcattgcaagcaaagagtacactaaag 1000
Query: 807 tcaggttgaacccttttncaaaatatcaacttgtgaaagaaccggaaatgttacttgnaa 866
||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||
Sbjct: 999 tcagg-tgaacccttttccaaaatatcaac-tgtgaaagaaccggaaatggtacttgaaa 942
Query: 867 cagaggacatttagagtaatgtgatgagtgtttcagttttacaaagaactttagaaacaa 926
||||||||| | | ||||||||||||||| |||| | ||| |||||||| |||||||
Sbjct: 941 cagaggacaatgaaggtaatgtgatgagtg-ttcaagtatacgaagaacttaagaaacag 883
Query: 927 ggcctt 932
||||||
Sbjct: 882 ggcctt 877
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6974
Number of Sequences: 1807
Number of extensions: 6974
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)