BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA02RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1370 1404 0.0
>3x_Contig1370
Length = 5848
Score = 1404 bits (708), Expect = 0.0
Identities = 782/802 (97%), Gaps = 5/802 (0%)
Strand = Plus / Plus
Query: 44 acttttaattctatagatctgaataat--aaat-acatcggactggtcaagtctctaaat 100
||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 5044 acttttaattctagagatctgaataaatcaaatcacatcggactggtcaagtctctaaat 5103
Query: 101 ctttatcaataattgtggaagtcaaaatgaaaagtattttcatatccttttctctgtccg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5104 ctttatcaataattgtggaagtcaaaatgaaaagtattttcatatccttttctctgtccg 5163
Query: 161 caccaaatccaataggatttcgttgataaataataagaccatttttttattttttacctt 220
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 5164 caccaaatccaataggatttcgttgataaataataagaccagctcattattttttacctt 5223
Query: 221 tgaatcgaaaacatccgtgtcattcgaataaaaaggcatatcgtgatcatttcgaaagaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5224 tgaatcgaaaacatccgtgtcattcgaataaaaaggcatatcgtgatcatttcgaaagaa 5283
Query: 281 atgacttcgacagttgtctaatatagttagtagaaaggtttgacgatagtctcaatgtaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284 atgacttcgacagttgtctaatatagttagtagaaaggtttgacgatagtctcaatgtaa 5343
Query: 341 actaaagttcaaaccaatgctgaaaaaattaaatttcaataacataccaatacctctagc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5344 actaaagttcaaaccaatgctgaaaaaattaaatttcaataacataccaatacctctagc 5403
Query: 401 agcaacatcagttgctaccatgataggagatctaccggacctaaactcagccaaaaccca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5404 agcaacatcagttgctaccatgataggagatctaccggacctaaactcagccaaaaccca 5463
Query: 461 atcacgctcgttctgagccttgtcaccgtgaatggccaaagctggccagccttcagttct 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 atcacgctcgttctgagccttgtcaccgtgaatggccaaagctggccagccttcagttct 5523
Query: 521 caaataagaagtgatctcatcacaagttctcttagtggaagcaaaaatgatgatcttgga 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 caaataagaagtgatctcatcacaagttctcttagtggaagcaaaaatgatgatcttgga 5583
Query: 581 gtcttgatcttgagaagcggtttccaaatgcttggccaatctatctctcttttcgaaatc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 gtcttgatcttgagaagcggtttccaaatgcttggccaatctatctctcttttcgaaatc 5643
Query: 641 agtaaggacttcgacgatctgagtgattgtgtgggatgcagacaatttcaaagacccant 700
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct: 5644 agtaaggacttcgacgatctgagtgattgtgtgggatgcagacaattccaaagaaccaat 5703
Query: 701 ttgaacttgaattggatcatgcaaattgtcacttgccaattgtttaactttc-ttggcca 759
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct: 5704 ttgaacttgaattggatcatgcaaatagtcacttgccaattgtttaacttcctttggcca 5763
Query: 760 agtagcggaccacattaaagtttgtctatcaagttttatttgatcgacaatttttcttga 819
||||||||||||||| ||||||||||||||| || | ||||||||||||||||||| |||
Sbjct: 5764 agtagcggaccacatcaaagtttgtctatcaggtctaatttgatcgacaatttttc-tga 5822
Query: 820 tttgaggttcgaaacccatatc 841
||||||||||||||||||||||
Sbjct: 5823 tttgaggttcgaaacccatatc 5844
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9155
Number of Sequences: 1807
Number of extensions: 9155
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)