BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA03FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1430 1427 0.0
>3x_Contig1430
Length = 7411
Score = 1427 bits (720), Expect = 0.0
Identities = 802/816 (98%), Gaps = 10/816 (1%)
Strand = Plus / Minus
Query: 88 acggatcaagcaagcaggaaaatggcagttataatgatacgtctatcttgaattctttaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7093 acggatcaagcaagcaggaaaatggcagttataatgatacgtctatcttgaattctttaa 7034
Query: 148 atttgaaggaggaaataggtaatttggttttatcaattgatacacttaaaaagcagctgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7033 atttgaaggaggaaataggtaatttggttttatcaattgatacacttaaaaagcagctgg 6974
Query: 208 agcttctacatcatttgatattgaaggcggagctaactaataatcaaacgagactgatat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6973 agcttctacatcatttgatattgaaggcggagctaactaataatcaaacgagactgatat 6914
Query: 268 tgttgaagaaatcggaaagaacacttagaagagaactggaatacaaagaattgcttaaac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6913 tgttgaagaaatcggaaagaacacttagaagagaactggaatacaaagaattgcttaaac 6854
Query: 328 aacagcatatggttcatgagaacgctaatattttatatg-gcagggcaaaactttgtatt 386
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6853 aacagcatatggttcatgagaacgctaatattttatatgcgcagggcaaaactttgtatt 6794
Query: 387 aaatcttatttgactgatgtgtctcttgaagatggtaaagaaactgtttactatttgata 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6793 aaatcttatttgactgatgtgtctcttgaagatggtaaagaaactgtttactatttgata 6734
Query: 447 aatgtacagcatatcttcaacaaccagttagttacgtgggatatacctcgaagattcagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6733 aatgtacagcatatcttcaacaaccagttagttacgtgggatatacctcgaagattcagc 6674
Query: 507 gaattctacaggttgaactcctacttgaagaagaagtatccgggggtggtaagctatttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6673 gaattctacaggttgaactcctacttgaagaagaagtatccgggggtggtaagctatttg 6614
Query: 567 caaaattctaatggcttcccggagagagtaaaaatgtcattaaagtatcatgtatcgaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6613 caaaattctaatggcttcccggagagagtaaaaatgtcattaaagtatcatgtatcgaaa 6554
Query: 627 acattattgtatgaagaaagaagaaaaagactcgaatactacatgcaggaattgttaaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6553 acattattgtatgaagaaagaagaaaaagactcgaatactacatgcaggaattgttaaaa 6494
Query: 687 atacgtgaggtttgtcaagatgaatactttagaaaatatttgacggatgtttccaacact 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6493 atacgtgaggtttgtcaagatgaatactttagaaaatatttgacggatgtttccaacact 6434
Query: 747 tttaaggttaaagagaatttgg-agaagatgttgaggataaga-aagatcaatggttctt 804
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 6433 tttaaggttaaagagaatttggaagaagatgttgaggataagagaagatcaatggttctt 6374
Query: 805 tttaagacggac-acaccgttgga-aagttac-aatgtat-agcaggaaga-ttgatgat 859
|| ||||||||| ||||||||||| ||||||| ||||||| |||||| ||| ||||||||
Sbjct: 6373 ttaaagacggacaacaccgttggagaagttacaaatgtatcagcagggagatttgatgat 6314
Query: 860 ccc-aaagtttctcacatgaa-tagattcctttgag 893
||| ||||||||||| ||||| |||||| |||||||
Sbjct: 6313 cccaaaagtttctcagatgaattagatttctttgag 6278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8234
Number of Sequences: 1807
Number of extensions: 8234
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)