BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA03RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig452 745 0.0
>3x_Contig452
Length = 1623
Score = 745 bits (376), Expect = 0.0
Identities = 414/423 (97%), Gaps = 3/423 (0%)
Strand = Plus / Minus
Query: 219 tggtgcaatgatgaagaagaactagcgacttgaggcggcggcgtattgggccacatgaca 278
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1623 tggtgcaatgatgaagaagaactagcgacttgagncggcggcgtattgggccacatgaca 1564
Query: 279 cctggaatctgctggtgagagttgttactattaagtgagttttgttgtgaatgtatctgt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 cctggaatctgctggtgagagttgttactattaagtgagttttgttgtgaatgtatctgt 1504
Query: 339 tggtgctggtgttgcaattgcagttggtgttggagctgcagctggagttggagttgatgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 tggtgctggtgttgcaattgcagttggtgttggagctgcagctggagttggagttgatgc 1444
Query: 399 tgaagctgttgctcatgttcttgtcgcagtgggacatccaccgaaccccagaacgacgag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 tgaagctgttgctcatgttcttgtcgcagtgggacatccaccgaaccccagaacgacgag 1384
Query: 459 agcatgggtaatttagccgtctgcattggatcaggcgactgtggaggtgatttgcaacgt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 agcatgggtaatttagccgtctgcattggatcaggcgactgtggaggtgatttgcaacgt 1324
Query: 519 gagagcttgttc-aggcgtctat-agttctctatctcgtttcgatactggatctgaattc 576
|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 1323 gagagcttgttcaaggcgtcgataagttctctatctcgtttcgatactggatctgaattc 1264
Query: 577 gagcttgaattagaactcgaa-ttgcgctttccgttgtgccccgtttaattattcggtgc 635
||||||||||||||||||||| ||||||| |||| |||||||||||| ||||| ||||||
Sbjct: 1263 gagcttgaattagaactcgaatttgcgctatccgctgtgccccgtttcattatacggtgc 1204
Query: 636 gga 638
|||
Sbjct: 1203 gga 1201
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5803
Number of Sequences: 1807
Number of extensions: 5803
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)