BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA05FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1435 0.0
3x_Contig1701 1203 0.0
>3x_Contig1805
Length = 19369
Score = 1435 bits (724), Expect = 0.0
Identities = 774/784 (98%), Gaps = 5/784 (0%)
Strand = Plus / Minus
Query: 86 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatcattcactg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8921 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatcattcactg 8862
Query: 146 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8861 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 8802
Query: 206 ttatcttcggtggtttatagataacttctataatttctgagttggacattaatgttggta 265
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8801 ttatcttcggtggtagatagataacttctataatttctgagttggacattaatgttggta 8742
Query: 266 ctggccttcgctctgtattacttgacatggtattgattttacaatggtagcgtcagttat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8741 ctggccttcgctctgtattacttgacatggtattgattttacaatggtagcgtcagttat 8682
Query: 326 ggttccatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8681 ggttccatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 8622
Query: 386 cagctccatcattttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8621 cagctccatcattttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 8562
Query: 446 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgccaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8561 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgccaact 8502
Query: 506 ttgaatgccaccggtctgatgctctggtttgaattgctgataaagtttttacgatagaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8501 ttgaatgccaccggtctgatgctctggtttgaattgctgataaagtttttacgatagaat 8442
Query: 566 gttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8441 gttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaaga 8382
Query: 626 acttaaatgtggagggtttccatgagcaggtcaattgagagcagaaaaactgttaagaag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8381 acttaaatgtggagggtttccatgagcaggtcaattgagagcagaaaaactgttaagaag 8322
Query: 686 ttgacgatttcggtagtgaaatcaaatggaaaaaaagagaatgccatgatactttttttg 745
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8321 ttgacga-ttcggtagtgaaatcaaatggaaaaaaagagaatgccatgatactttttttg 8263
Query: 746 gaaaccactaatgatagttccaaaaag-aaaggcgtataagaactaaaatgatggaataa 804
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 8262 gaaaccactaatgatag-tccaaaaagaaaaggcgtataagaactaaaatgatggaataa 8204
Query: 805 tggggtatttcg-atccatctctgatagtaagggaaaggaaaatggtttaataaagtgca 863
| |||||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 8203 t-gggtatttcgaatccatctctgatagtaagggaaatgaaaatgttataataaagtgca 8145
Query: 864 agct 867
||||
Sbjct: 8144 agct 8141
>3x_Contig1701
Length = 10926
Score = 1203 bits (607), Expect = 0.0
Identities = 752/787 (95%), Gaps = 10/787 (1%)
Strand = Plus / Minus
Query: 86 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatcattcactg 145
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9071 aggttaaacgcataagaacctacaatctaatagcattaaacacgtttagatgattcactg 9012
Query: 146 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9011 attagaatttcggccaagagtacgccattctcgcaaatacccgtgctctctttcctatca 8952
Query: 206 ttatcttcggtggtttatagataacttctataatttctgagttggacattaatgttggta 265
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8951 ttatcttcggtggtaaatagataacttctataatttctgagttggtcattaatgttggta 8892
Query: 266 ctggccttcgctctgtattacttgacatggtattgattttacaatggtagcgtcagttat 325
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 8891 ctggccttcgctctgtattacttgacatggtattgattttacaatgggagggtcagttat 8832
Query: 326 ggttccatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 385
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8831 ggtttcatgctattattcattcatcactattctcacatttccgcaatactgaaaaggctg 8772
Query: 386 cagctccatcattttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 445
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8771 caactccatcgttttgtttacttgtttcctgtttaaggaatattttagaaaaacatcatg 8712
Query: 446 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgcc-aac 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8711 aaaaaatgaccaagtatagcagaagttgcacagtgtttattgacatgtgcgatgccaaac 8652
Query: 505 tttgaa-tgccaccggtctgatgctctggtttgaattgctgataaagtttttacgataga 563
|||||| || | ||||| | | ||| | |||||| ||||| || | ||||||||||||
Sbjct: 8651 tttgaattgtcgtcggtc-ggtactccgttttgaaatgctggtatggcttttacgataga 8593
Query: 564 atgttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8592 atgttttcaacaattattatacaaactaaggctaaaatttatgatgctaattaaatgcaa 8533
Query: 624 gaacttaaatgtggagggtttccatgagcaggtcaattgagagcagaaaaactgttaaga 683
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8532 gaacttaaatgtggagggtttccatgagcacgtcaattgagagcagaaaaactgttaaga 8473
Query: 684 agttgacgatttcggtagtgaaatcaaatggaaaaaaagagaatgccatgatac-ttttt 742
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8472 agttgacga-ttcggtagtgaaatcaaatggaaaaaaagagaatgccatgatactttttt 8414
Query: 743 ttggaaaccactaatgatagttccaaaaag-aaaggcgtataagaactaaaatgatggaa 801
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 8413 ttggaaaccactaatgatag-tccaaaaagaaaaggcgtataagaactaaaatgatggaa 8355
Query: 802 taatggggtatttcg-atccatctctgatagtaagggaaaggaaaatggtttaataaagt 860
|||| |||||||||| |||||||||||||||||| ||||| ||||||| | |||||||||
Sbjct: 8354 taat-gggtatttcgaatccatctctgatagtaa-ggaaatgaaaatgttataataaagt 8297
Query: 861 gcaagct 867
|||||||
Sbjct: 8296 gcaagct 8290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7451
Number of Sequences: 1807
Number of extensions: 7451
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)