BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA05RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1672 1485 0.0
>3x_Contig1672
Length = 13609
Score = 1485 bits (749), Expect = 0.0
Identities = 847/869 (97%), Gaps = 8/869 (0%)
Strand = Plus / Minus
Query: 55 atatgtgacgttcaaggtgaagtaatatcacagactaatgcttataagattttcaaaaag 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7157 atatgtgacgttcaaggtgaagtaatatcacagactaatgcttataagattttcaaaaag 7098
Query: 115 tattgcaccgctgatgaacttttagatgttgagggtttattaaaattcttaacaaaacaa 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7097 tattgcaccgctgatgaacttttagatgttgagggtttattaaaattcttaacaaaacaa 7038
Query: 175 ccgttcctacaattattcgaagaagattattctagaccgcttatcttatatttcatatca 234
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 7037 ccgttcctacaattattcgaagaagattattctagaccgctaaacgaatatttcatatca 6978
Query: 235 tcatctcataacacttatcttatggggaagcaagtggtggacgaggtaagtgtcgaagct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6977 tcatctcataacacttatcttatggggaagcaagtggtggacgaggtaagtgtcgaagct 6918
Query: 295 tatactcgtgctttgcaacaaggatgccgttgtatcgaaatagacatatggcaaggagat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6917 tatactcgtgctttgcaacaaggatgccgttgtatcgaaatagacatatggcaaggagat 6858
Query: 355 catgggcctgtggtatgccatggtcttttcacacagtcaatccccttagaagatgttgtt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6857 catgggcctgtggtatgccatggtcttttcacacagtcaatccccttagaagatgttgtt 6798
Query: 415 aaaacgatacgaaaatatgcgtttatcacttcaccttatccgcttattgtatctctagag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6797 aaaacgatacgaaaatatgcgtttatcacttcaccttatccgcttattgtatctctagag 6738
Query: 475 atccactgtaagaaggattaccaattaatgataacgaaaattatgaaggaaattttggga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6737 atccactgtaagaaggattaccaattaatgataacgaaaattatgaaggaaattttggga 6678
Query: 535 gatcttatattcgtaattccaccaaacacttcactattatcaccagagcagctgaaaaat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6677 gatcttatattcgtaattccaccaaacacttcactattatcaccagagcagctgaaaaat 6618
Query: 595 cgcattatattgaaaagtaagaagacgcatgctgtagagtctgaaattataagtggatca 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6617 cgcattatattgaaaagtaagaagacgcatgctgtagagtctgaaattataagtggatca 6558
Query: 655 acttcatcctatacgtcttcttcctctcatgaattcac-ttctgaaacaaatgacatgcg 713
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 6557 acttcatcctatacgtcttcttcctctcatgaa-tcactttctgaaacaaatgacatgcg 6499
Query: 714 gttaatcaagaagcggggcttac-aaaaagtactaccagtagcacttcttcaaatacgac 772
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 6498 gttaatcaagaagcggggcttacaaaaaagtactaccagtagcacttctccaaatacgac 6439
Query: 773 aacagtttcagtgacaacatagagaaacaacaaatcgtttttgttttcaacaaaagatct 832
||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 6438 aacagttccagtgacaacaaagagaaacaacaaatcgttattgttatcaac-aaagatca 6380
Query: 833 ggatatccagacaaggttcattgaaatatctgggattcacggnagtaagatttcagaact 892
||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct: 6379 tgatat-cagacaaggttca-tgaaatatctgggattcacgg-agtaaga-ttcagaaac 6324
Query: 893 tttccgttgcctgaatcaaaaaccactac 921
||| |||||||||||||||||||||||||
Sbjct: 6323 ttttcgttgcctgaatcaaaaaccactac 6295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7578
Number of Sequences: 1807
Number of extensions: 7578
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)