BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA08FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 1501 0.0
>3x_Contig1764
Length = 22510
Score = 1501 bits (757), Expect = 0.0
Identities = 795/805 (98%), Gaps = 2/805 (0%)
Strand = Plus / Minus
Query: 87 aacttgactttctgaaatttttcagattaagctatttgataacaaaaaattgccgagatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8149 aacttgactttctgaaatttttcagattaagctatttgataacaaaaaattgccgagatg 8090
Query: 147 agatgagctgagaggcatggaataaaagatacattatctgttaacaagagcatagcagac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8089 agatgagctgagaggcatggaataaaagatacattatctgttaacaagagcatagcagac 8030
Query: 207 tcaaataaagtaaatccattggtagtatagcatgctcagaaacatcacaagaagttattc 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8029 tcaaataaagtaaaaccattggtagtatagcatgctcagaaacatcacaagaagttattc 7970
Query: 267 gaacaagattcgttctgcggtcaaagtgcctaacgaatcgtatattaaggacagaaaagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7969 gaacaagattcgttctgcggtcaaagtgcctaacgaatcgtatattaaggacagaaaagt 7910
Query: 327 aacgttcgatcggaactttccagtgcataagaggactaaggcttgggagaaagatggaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7909 aacgttcgatcggaactttccagtgcataagaggactaaggcttgggagaaagatggaat 7850
Query: 387 ggataaagataaatggttcaggaaaaattacgcacatgttcatgcaagagaaaaaaatgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7849 ggataaagataaatggttcaggaaaaattacgcacatgttcatgcaagagaaaaaaatgc 7790
Query: 447 aaggctgaataacggaggaagtgacccattcgataagaagaaaaagtattacgatcggat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7789 aaggctgaataacggaggaagtgacccattcgataagaagaaaaagtattacgatcggat 7730
Query: 507 caaacaagaagaatcgtccaaaagggaacagtttagaagtcataggtcagagtatactaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7729 caaacaagaagaatcgtccaaaagggaacagtttagaagtcataggtcagagtatactaa 7670
Query: 567 aatgcaccctttacaaggtttaaagcctaacccgttggttgattacgtttttggtaccaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669 aatgcaccctttacaaggtttaaagcctaacccgttggttgattacgtttttggtaccaa 7610
Query: 627 cagtgtaattagtgccttaactgcgaagaagagagaatatttcgtaaagttgcatcatta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7609 cagtgtaattagtgccttaactgcgaagaagagagaatatttcgtaaagttgcatcatta 7550
Query: 687 cggaccattgaatacacagattcaatcgttgtgttcgaaaaataatattcagactgaaga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7549 cggaccattgaatacacagattcaatcgttgtgttcgaaaaataatattcagactgaaga 7490
Query: 747 ggtagataaacataggcttaatctatacactaattatgctgtgcataataatgtggttct 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7489 ggtagataaacataggcttaatctatacactaattatgctgtgcataataatgtggttct 7430
Query: 807 cgaatgtaaaccactccagccttctgaattattctatcttgggttggtaaaacaatgaag 866
|||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||
Sbjct: 7429 cgaatgtaaaccactccagcctcctgaattatctcatcttgggttggt-aaaccatgaag 7371
Query: 867 cattgttctttcgacaagagcgaaa 891
|| ||| | ||||||||||||||||
Sbjct: 7370 ca-tgtacattcgacaagagcgaaa 7347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7504
Number of Sequences: 1807
Number of extensions: 7504
Number of successful extensions: 163
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)