BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA11FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1080 1423 0.0
>3x_Contig1080
Length = 4249
Score = 1423 bits (718), Expect = 0.0
Identities = 795/814 (97%), Gaps = 5/814 (0%)
Strand = Plus / Plus
Query: 82 tgtcatggaacaagatgttagggtatggaggggaatgctggtttgcgatatggtttgtga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2826 tgtcatggaacaagatgttagggtatggaggggaatgctggtttgcgatatggtttgtga 2885
Query: 142 attcaaatgctcctccgtttggaggcaaaaacaaggtaatatgaaagatggcttacatga 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2886 attcaaatgctcctccgtttggaggcaaaaacaaggtaatatgaaagatggcttacatga 2945
Query: 202 attgttcttttatgacaaaaaacaagaagcaaataatcgcaatgaaagcgattctgttgc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2946 attgttcttttatgacaaaaaacaagaagcaaataatcgcaatgaaagcgattctgttgc 3005
Query: 262 tagaaatgaaactgtagtcgacttggagctggattcccaatcattctcattacttggagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3006 tagaaatgaaactgtagtcgacttggagctggattcccaatcattctcattacttggagt 3065
Query: 322 ttctaccgagatattagataatcatacccaacaccaatctaatataacacaaactgaacg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3066 ttctaccgagatattagataatcatacccaacaccaatctaatataacacaaactgaacg 3125
Query: 382 gtttctaaaattcttgcggaaacagacgttccctataaatttccaagtggtaaagacagt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 gtttctaaaattcttgcggaaacagacgttccctataaatttccaagtggtaaagacagt 3185
Query: 442 aagcctcgacggtgaaacaaattcgacagggtatgaagctgcaacttcttttcttacaga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 aagcctcgacggtgaaacaaattcgacagggtatgaagctgcaacttcttttcttacaga 3245
Query: 502 tacttacagagatatggatgttgttgttgtggacaaatttttaagtgtaaacgcttttcg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3246 tacttacagagatatggatgttgttgttgtggacaaatttttaagtgtaaacgcttttcg 3305
Query: 562 tcctaaatacgtggacgagcctctgatgaagttagattcaatacatgactatctggaagt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306 tcctaaatacgtggacgagcctctgatgaagttagattcaatacatgactatctggaagt 3365
Query: 622 aaatgaagaagacagagatgctcatgtagctgtaaataatctctcctcattcatcaagtt 681
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 3366 aaatgaagaagacagagatgctcatgtagctttaaataatctctcctcattcatcaag-t 3424
Query: 682 ttttcatgcttactgatttcctttgcattgatttgggatatcaatgggaatatttgttgg 741
|||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||
Sbjct: 3425 ttttcatgcttactgattccctttgca-tgatttgggatatcaat-ggaata-ttgttgg 3481
Query: 742 tggatagattccagctaagaagtccaaggaatctactacattacgatgtcggggcttgtt 801
|||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct: 3482 tggatagatttcagctaagaagtacaaggaatctactacataacgatgtcggggc-tgtt 3540
Query: 802 aaattaataaacttccgtgtaggaatagtgaatgatatttggttagttttaaatatttcc 861
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct: 3541 aaagtaataaacttccgtgtaggaatagtgaatgatattgggttagttttaaatcagttc 3600
Query: 862 aaacagaatggttctgactattatattgaatttt 895
||||| |||||||||||||||||||||| ||||
Sbjct: 3601 aaacaagatggttctgactattatattgagtttt 3634
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7860
Number of Sequences: 1807
Number of extensions: 7860
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)