BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA11RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1021 0.0
>3x_Contig1630
Length = 14771
Score = 1021 bits (515), Expect = 0.0
Identities = 600/627 (95%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 44 cttttcttttacttatcaatgattttatggtatttatgaagacattattacacagttata 103
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 13407 cttttcttttacttatcaatgatcatattttatttatgaagacattattacacagttata 13466
Query: 104 tgagggatctacggataaaagacaaagcagcttttgaattgataaattttaagagttttt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13467 tgagggatctacggataaaagacaaagcagcttttgaattgataaattttaagagttttt 13526
Query: 164 ggaagtttttcgttaagaattgtgcaaacatgattgaaatggactcgtcgttttagtaat 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 13527 ggaagtttttcgttaagaattgtgcaaacatgattgaaatggactcgtcgttgcagaatc 13586
Query: 224 atattgctgaagttttcgagttagagagacaccggaaagatcactttactaaaatgccaa 283
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13587 aaattgctgaagttttcgagttagagagacaccggaaagatcactttactaaaatgccaa 13646
Query: 284 acgaaacggtgtcgttatacctggaaataaccggtaataagaatacgaagtttgaagagc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13647 acgaaacggtgtcgttatacctggaaataaccggtaataagaatacgaagtttgaagagc 13706
Query: 344 agaactttcctagtgtgatccagcaaaatattaaaaaggttcttcataatcccgaagatg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13707 agaactttcctagtgtgatccagcaaaatattaaaaaggttcttcataatcccgaagatg 13766
Query: 404 aatccaattgtaaaaaactcttgttactatgcaaggcctcacacgcctcagagtataata 463
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13767 aatccaattgtagaaaactcttgttactatgcaaggcctcacacgcctcagagtataata 13826
Query: 464 agtttttgtcaatttttgtgaaaagaggagacttcactgttcatgaattattaaaactta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13827 agtttttgtcaatttttgtgaaaagaggagacttcactgttcatgaattattaaaactta 13886
Query: 524 ttgtatttaaattactaagttttgaggtaattcataagacatcactttttgatttattat 583
|| ||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 13887 tttcattaaaattactaagttttgaggtaattcagaagacatcacattttgatttattat 13946
Query: 584 gtgaattagtgccacaagaaaccttttattatggtctaattttccaaaaataaaaagtat 643
||||||||||| |||||| || |||| |||||||||||| ||| | ||||| ||||| ||
Sbjct: 13947 gtgaattagtgtcacaagtaagctttaattatggtctaaattt-cgaaaatgaaaagaat 14005
Query: 644 gcctttgtcaagaggattttaaaacaa 670
|||||||||||||||| ||| ||||||
Sbjct: 14006 gcctttgtcaagaggaatttcaaacaa 14032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9388
Number of Sequences: 1807
Number of extensions: 9388
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)