BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZA12RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1392 0.0
>3x_Contig1698
Length = 21001
Score = 1392 bits (702), Expect = 0.0
Identities = 784/802 (97%), Gaps = 7/802 (0%)
Strand = Plus / Minus
Query: 48 atcatcagatttgcctactttttctaagatatccaagagtttttggatatcagagttttc 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10296 atcatcagatttgcctacgttttctaagatatccaagagtttttggatatcagagttttc 10237
Query: 108 gtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcgcag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10236 gtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcgcag 10177
Query: 168 cctcccgcttgattctgtttgagatattgaagagtttgatgatccaaatttatataacgc 227
|||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||
Sbjct: 10176 cctcccgcttgattctgtttgagatattgaagagtttgatgatccaaactgagagaacgc 10117
Query: 228 agttgagacatgcgagactatattaacatttctgtcatcgtggatatcgtattggaaatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10116 agttgagacatgcgagactatattaacatttctgtcatcgtggatatcgtattggaaatt 10057
Query: 288 tggcttcaattcgtccgtatgtttcatgatcaactcagtcattttaccatggaaatcgag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10056 tggcttcaattcgtccgtatgtttcatgatcaactcagtcattttaccatggaaatcgag 9997
Query: 348 agtagacattagttttaaaagttgtgcgcgtctaagcccagctggattattgcctaaatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9996 agtagacattagttttaaaagttgtgcgcgtctaagcccagctggattattgcctaaatt 9937
Query: 408 tctcatctttgtgaatatcctcaaagcgtggtccaaatgctcgtacgtttggtcatggat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9936 tctcatctttgtgaatatcctcaaagcgtggtccaaatgctcgtacgtttggtcatggat 9877
Query: 468 accgaatgcagcgttgaacaatatcaacgtacaagcagatgtaaaaatgtattctctatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9876 accgaatgcagcgttgaacaatatcaacgtacaagcagatgtaaaaatgtattctctatc 9817
Query: 528 catataaccaaataatgcgaccatgttctgatccattagagcccacaaagacctaatagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9816 catataaccaaataatgcgaccatgttctgatccattagagcccacaaagacctaatagt 9757
Query: 588 attgatggatccttgtaaagaacaattcaacaaggatgagattgttcttgagtagttctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9756 attgatggatccttgtaaagaacaattcaacaaggatgagattgttcttgagtagttctt 9697
Query: 648 caaattaatatatgcattagttactttcgaattgttttgagctgaaatggatgcgaaatg 707
|||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 9696 caaattaatatatgcattagttac-ttcgaattg-tttgagctg-aatggatgcgaaat- 9641
Query: 708 ggaacaacattggtctgatagccaaattcataccttgggaatattcagtgaaaacgttgg 767
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9640 ggaacaacaatggtctgatagccaaattcataccttggaaatattcagtgaaaacgttgg 9581
Query: 768 tacaaaagtc-tgaaatcttggatattctttggagtgaaatcaccttgtagaaaatcaga 826
||| |||||| ||||||||| || ||||||| ||||||||||| ||||||||||||||||
Sbjct: 9580 tac-aaagtcttgaaatctt-gagattcttttgagtgaaatcaacttgtagaaaatcaga 9523
Query: 827 aagatgcgttcttcactcaagc 848
|||||||||||| |||||||||
Sbjct: 9522 aagatgcgttctccactcaagc 9501
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7309
Number of Sequences: 1807
Number of extensions: 7309
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)