BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZB01RM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig787                                                         1524   0.0  

>3x_Contig787 
          Length = 1880

 Score = 1524 bits (769), Expect = 0.0
 Identities = 830/845 (98%), Gaps = 4/845 (0%)
 Strand = Plus / Plus

                                                                        
Query: 56   gaaaaaaaatcaaagccaacattataacagctacgaacgactcggtaaagtccagtagta 115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  gaaaaaaaatcaaagccaacattataacagctacgaacgactcggtaaagtccagtagta 895

                                                                        
Query: 116  gttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttattacaattctaa 175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  gttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttattacaattctaa 955

                                                                        
Query: 176  tataactactagtatgcaattctttcattattatttttagctattgttaaacgttttagg 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  tataactactagtatgcaattctttcattattatttttagctattgttaaacgttttagg 1015

                                                                        
Query: 236  tctatatcccagaagaatactgggctgctgtaatccgtaatagattgtatctatttatta 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 tctatatcccagaagaatactgggctgctgtaatccgtaatagattgtatctatttatta 1075

                                                                        
Query: 296  ttgtttctattactattttttttggttttcctgtacttacttactctttggtgcaagttt 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ttgtttctattactattttttttggttttcctgtacttacttactctttggtgcaagttt 1135

                                                                        
Query: 356  gaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactgaccctgatacc 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 gaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactgaccctgatacc 1195

                                                                        
Query: 416  accaacagtttcaatagcagctacagtgacgtcacccataatgtaagtagcaactttccc 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 accaacagtttcaatagcagctacagtgacgtcacccataatgtaagtagcaactttccc 1255

                                                                        
Query: 476  taccgtagtccccttcttgaccagaaaacaatcgcggaacacattttcaccgttcccacc 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 taccgtagtccccttcttgaccagaaaacaatcgcggaacacattttcaccgttcccacc 1315

                                                                        
Query: 536  agcgaaggtatggatgttgcgtaccgtgtacaccgggatcaaatttaaagtacttgcagc 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 agcgaaggtatggatgttgcgtaccgtgtacaccgggatcaaatttaaagtacttgcagc 1375

                                                                        
Query: 596  tgcctgtaatacttgaacgacacctgtagaaccgaatctgtatagtacaaggtctcgtat 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 tgcctgtaatacttgaacgacacctgtagaaccgaatctgtatagtacaaggtctcgtat 1435

                                                                        
Query: 656  aacttcaattctctgtatcagtttctcatctaacggttttaacgtatcgtcatctttcaa 715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 1436 aacttcaattctctgtatcagtttctcatctaacggttttaacgtatcgtcatcttcaaa 1495

                                                                        
Query: 716  cgtatcaac-aattctgtgccttcttcgt-acgtatgaacccttgtttcttcattttacg 773
            ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1496 cgtatcaacaaattctgtgccttcttcgtaacgtatgaacccttgtttcttcaatttacg 1555

                                                                        
Query: 774  gaggaaaacttcggtgatggcacttgttaggacacattttacgtcagggtatttcaacat 833
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1556 gaggaaaacttcggtgatggcacttgttaggacacatttaacgtcagggtatttcaacat 1615

                                                                        
Query: 834  aatcttacttacgtttttatccgaatttggaatgat-catcttgtttcaagccaaaacag 892
            ||||||||| ||||||||||||| || ||| ||||| |||||||||  ||||||| ||||
Sbjct: 1616 aatcttactaacgtttttatccgcatctgg-atgatccatcttgttcaaagccaacacag 1674

                 
Query: 893  ggggg 897
             ||||
Sbjct: 1675 tgggg 1679


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7240
Number of Sequences: 1807
Number of extensions: 7240
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)