BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB03FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig245 1178 0.0
3x_Contig139 234 3e-61
>3x_Contig245
Length = 1434
Score = 1178 bits (594), Expect = 0.0
Identities = 622/630 (98%), Gaps = 1/630 (0%)
Strand = Plus / Plus
Query: 280 acaaggtaccagccaaagctttcaaaaatacaagtttaaggtcaatcagagaagagctga 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acaaggtaccagccaaagctttcaaaaatacaagtttaaggtcaatcagagaagagctga 508
Query: 340 tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 568
Query: 400 gttccagcagtaatagctgtaataactccgctactgataatatccacgctaatatcaatt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gttccagcagtaatagctgtaataactccgctactgataatatccacgctaatatcaatt 628
Query: 460 tcaatggtaacttgaacaatgtaactaattccaacatcgttcatgatcaatacggagcac 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcaatggtaacttgaacaatgtaactaattccaacatcgttcatgatcaatacggagcac 688
Query: 520 cggtacatcaaagctatagcatagtggcttccacaattggccaaaatacttcgaggccgg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cggtacatcaaagctatagcatagtggcttccacaattggccaaaatacttcgaggccgg 748
Query: 580 ttctaccacctctgcatatggctatccatagcccttatggggttcctcctatgatggggg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttctaccacctctgcatatggctatccatagcccttatggggttcctcctatgatggggg 808
Query: 640 ctacacactcttcatcatctactgcatcatcactatctatttcttctatggcgacaggat 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctacacactcttcatcatctactgcatcatcactatctatttcttctatggcgacaggat 868
Query: 700 cgtcacccttgttaccattagttcttccacctcctacagcatcagccgaactacaagcca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cgtcacccttgttaccattagttcttccacctcctacagcatcagccgaactacaagcca 928
Query: 760 aaagatcattagataggttcttattcacaggaccagaccataatcaagtttcaaacccag 819
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 929 aaagatcattagataggttcttattcacaggaccagaccataatcaag-ttcaaacccag 987
Query: 820 actcaaattcataacccaagtcaaggtcattacttcattgggtctgaaccctttattcct 879
||||||||||||||||||||||||||||||||||||||||| |||||||| || | |||
Sbjct: 988 actcaaattcataacccaagtcaaggtcattacttcattggttctgaacctttactccct 1047
Query: 880 tccactcattaacaaaagcccagtttctcg 909
|||||||| ||||||||||||||||||||
Sbjct: 1048 cccactcatcaacaaaagcccagtttctcg 1077
>3x_Contig139
Length = 903
Score = 234 bits (118), Expect = 3e-61
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 88 ttaatccggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttaatccggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaa 59
Query: 148 tagtcttctatagaacagctttacagtacatggttctacccagggtcttgaaaactta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tagtcttctatagaacagctttacagtacatggttctacccagggtcttgaaaactta 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6100
Number of Sequences: 1807
Number of extensions: 6100
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)