BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB03RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1343 1409 0.0
>3x_Contig1343
Length = 6877
Score = 1409 bits (711), Expect = 0.0
Identities = 785/802 (97%), Gaps = 6/802 (0%)
Strand = Plus / Minus
Query: 48 ttatgctaatcgggggatattggactagcaccgccaattaaggatgccaggtaagacagc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5543 ttatgctaatcgggggatattggactagcaccgccaattaaggatgccaggtaagacagc 5484
Query: 108 ggactcttgaagttctcgaaattttctttcacgagcgagaatcacctattgtctcaaatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5483 ggactcttgaagttctcgaaattttctttcacgagcgagaatcacctattgtctcaaatt 5424
Query: 168 atgcatatcattattatagtatatatgttgttcttttgagttacattatttt-ctttatt 226
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 5423 atgcatatcattattatagtatatatgttgttcttttgagttacattaagttacattatt 5364
Query: 227 ttcaccactagtgatcgattgaattagaatggagggatgagtagtgggtaaacgagtgaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5363 ttcaccactagtgatcgattgaattagaatggagggatgagtagtgggtaaacgagtgaa 5304
Query: 287 aaacctatcaaagaaggttcaattacaatagtagacttgaaacgaacagtagtgctgaca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5303 aaacctatcaaagaaggttcaattacaatagtagacttgaaacgaacagtagtgctgaca 5244
Query: 347 tggcaaatcttggtctccagtgatggcctgcatttcctgattgtgtagcagaaagccctg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5243 tggcaaatcttggtctccagtgatggcctgcatttcctgattgtgtagcagaaagccctg 5184
Query: 407 tggaagacgaattagtggtagcggtaggttcttgggtagttgtgttttggtttatttctc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5183 tggaagacgaattagtggtagcggtaggttcttgggtagttgtgttttggtttatttctc 5124
Query: 467 ctgttgctgcgataggcgacgacgaatctgttattagagaagaaggaagaagtagtgagg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 ctgttgctgcgataggcgacgacgaatctgttattagagaagaaggaagaagtagtgagg 5064
Query: 527 cagttcccgctgaaatttctattccactttcttgagctgtccctactgtaggtgtagaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 cagttcccgctgaaatttctattccactttcttgagctgtccctactgtaggtgtagaca 5004
Query: 587 caacaaacgtggatgcactaacgttaatgatctgtgatacatccaacgataggatagatg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 caacaaacgtggatgcactaacgttaatgatctgtgatacatccaacgataggatagatg 4944
Query: 647 ttccacctaaaacatctcctccgttggaaaatgcgtagctgacactagcggtctgtactt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 ttccacctaaaacatctcctccgttggaaaatgcgtagctgacactagcggtctgtactt 4884
Query: 707 caccatctaccttgattatatttgtaacggacatgaagttatttggatatntttggatgt 766
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct: 4883 caccatctaccttgattatatttgtaacggacatgaggttatttggatattttt-gatgt 4825
Query: 767 tattccttattgctatgatatggctggaaataatgcctaatgagacatttttggggatgg 826
|||| |||||||||||||||||||| ||||||||| ||||||||||| |||| | ||||
Sbjct: 4824 tatt-cttattgctatgatatggct-gaaataatg-ctaatgagacaatttttgtgatgc 4768
Query: 827 cttggtgtcggttcgattgggc 848
|| ||||| ||||||||||||
Sbjct: 4767 ctctgtgtc-gttcgattgggc 4747
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6214
Number of Sequences: 1807
Number of extensions: 6214
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)