BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB04FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1086 1516 0.0
>3x_Contig1086
Length = 4291
Score = 1516 bits (765), Expect = 0.0
Identities = 825/838 (98%), Gaps = 6/838 (0%)
Strand = Plus / Plus
Query: 86 ctaattgaaaattagaatatcagatattcctgcattgtttcaataacaaaccctgaaaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctaattgaaaattagaatatcagatattcctgcattgtttcaataacaaaccctgaaaac 220
Query: 146 ctaactaaacggtctttgaagtttttgaaatatataaacaaaaaacggacttgaataatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ctaactaaacggtctttgaagtttttgaaatatataaacaaaaaacggacttgaataatt 280
Query: 206 tatcagtttttaaaaacgattatacgtatttaagtaaaccaaattatgtggtacataatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tatcagtttttaaaaacgattatacgtatttaagtaaaccaaattatgtggtacataatt 340
Query: 266 tcgttaatgcatttttcccttcttcagataattgtgtctgaatctgaggcaagaaatttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcgttaatgcatttttcccttcttcagataattgtgtctgaatctgaggcaagaaatttc 400
Query: 326 ctcctgctttttgattgaattctaacaacacttctccagtgtatttccgcaaaccgttat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctcctgctttttgattgaattctaacaacacttctccagtgtatttccgcaaaccgttat 460
Query: 386 gcacatctacagtaggtaacgggtcgtatggtttttccgtaatacttgatagtctgctgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcacatctacagtaggtaacgggtcgtatggtttttccgtaatacttgatagtctgctgt 520
Query: 446 agcttgaaccaaaagtggaaatttcttcagtagcgtcgtaatcaacaaactccgagttaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agcttgaaccaaaagtggaaatttcttcagtagcgtcgtaatcaacaaactccgagttaa 580
Query: 506 cgttggcaatgctttcggaacatgctgttttcactatgatgtctaaagttggaacaatta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cgttggcaatgctttcggaacatgctgttttcactatgatgtctaaagttggaacaatta 640
Query: 566 aattgccatacttggaagaaaataaattgccagatacaacagtattcaaactaccagcca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aattgccatacttggaagaaaataaattgccagatacaacagtattcaaactaccagcca 700
Query: 626 atactatcttacgatccaacagatttccaactttggatatagtgtcaataacaaagttgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atactatcttacgatccaacagatttccaactttggatatagtgtcaataacaaagttgt 760
Query: 686 tccagattttgttgg-aaagtccttcctgaacttcatcgatgaattgaacaacanaatcg 744
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 761 tccaga-tttgttggaaaagtccttcctgaacttcatcgatgaattgaacaacaaaatcg 819
Query: 745 nagcccaattttacaggatatgacgcccaagaaaacaacgaactttttcaaatatttctc 804
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gagcccaa-tttacaggatatgacgcccaagaaaacaacgaactttttcaaatatttctc 878
Query: 805 ggttcgagaattttgtaacctctgtaataataacactgcaatattttttcaaaaatggct 864
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 879 ggttcgagaattttgtaacctctgtaataataacactgcaata-tttttcaaaaatggct 937
Query: 865 gcaagncgttccgcgggntttgaaagttaaaatgtattcaagtagcttcaacccatgt 922
|| || ||||||||||| | ||||||| ||||||||||||||||||| |||||||||
Sbjct: 938 gc-aggcgttccgcggg-tatgaaagtaaaaatgtattcaagtagctcaaacccatgt 993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7952
Number of Sequences: 1807
Number of extensions: 7952
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)