BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB06FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1602 0.0
>3x_Contig1485
Length = 9830
Score = 1602 bits (808), Expect = 0.0
Identities = 814/816 (99%)
Strand = Plus / Plus
Query: 87 gttcttcagcgaagaggagaagttgttacttgtggagaggattagagagaatcaacaggg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 gttcttcagcgaagaggagaagttgttacttgtggagaggattagagagaatcaacaggg 2555
Query: 147 tttcggtaaccaccatattaagaaatatcaaattgtcgaagcattcaaggatgttagaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 tttcggtaaccaccatattaagaaatatcaaattgtcgaagcattcaaggatgttagaac 2615
Query: 207 ttggttgtacttccttttctccgtatcatccaatattccaaatggtggtatcactaattt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 ttggttgtacttccttttctccgtatcatccaatattccaaatggtggtatcactaattt 2675
Query: 267 ctcctcgatcttactaaaagaagacttccaatttagtaccgataagagtttattagtcaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 ctcctcgatcttactaaaagaagacttccaatttagtaccgataagagtttattagtcaa 2735
Query: 327 catgggttccggtgcggttgaattggttggttgtccattatttgggatgttatccttttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 catgggttccggtgcggttgaattggttggttgtccattatttgggatgttatccttttg 2795
Query: 387 gtgtttgaagcgtaaatataaggtcgttgggtcaagattggcctgggcattctttgctac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 gtgtttgaagcgtaaatataaggtcgttgggtcaagattggcctgggcattctttgctac 2855
Query: 447 cgctatatgtttcatgggtgtttgtatgcttgcctttgctaagcatgataagagtgcaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2856 cgctatatgtttcatgggtgtttgtatgcttgcctttgctaagcatgataagagtgcaag 2915
Query: 507 gttagccggtctaatgttatttggtatctctccagtctccttcatttgtgtcttgtcctg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2916 gttagccggtctaatgttatttggtatctctccagtctccttcatttgtgtcttgtcctg 2975
Query: 567 catctcttccaataccttaggtttcacgaaaaaatggacagtttcctctatcaatttgtt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2976 catctcttccaataccttaggtttcacgaaaaaatggacagtttcctctatcaatttgtt 3035
Query: 627 ggcttatgcaagtgccaacattgcaggtccacatacattcattgctactcaggctcctag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 ggcttatgcaagtgccaacattgcaggtccacatacattcattgctactcaggctcctag 3095
Query: 687 ctatactggggcaaagatttcattagtggtcaactatgcagcagcgatggtcattatcgt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3096 ctatactggggcaaagatttcattagtggtcaactatgcagcagcgatggtcattatcgt 3155
Query: 747 tcttatttacatcgtcaatgcccgagaaaacaagagaagagaccagattgaagcagaaag 806
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 3156 tcttatttacatcgtcaatgccagagaaaacaagagaagagacaagattgaagcagaaag 3215
Query: 807 aactcatgaacaagtggtggagaacattgagttcgctgatctaacagatttcgagaattt 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216 aactcatgaacaagtggtggagaacattgagttcgctgatctaacagatttcgagaattt 3275
Query: 867 gaaattcaggtacgcaatctaaatagaactacagtt 902
||||||||||||||||||||||||||||||||||||
Sbjct: 3276 gaaattcaggtacgcaatctaaatagaactacagtt 3311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5913
Number of Sequences: 1807
Number of extensions: 5913
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)