BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1245 1661 0.0
>3x_Contig1245
Length = 6017
Score = 1661 bits (838), Expect = 0.0
Identities = 862/869 (99%), Gaps = 1/869 (0%)
Strand = Plus / Plus
Query: 44 cttcttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4460 cttcttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttat 4519
Query: 104 tttttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 tttttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaa 4579
Query: 164 acacggaaaccagaaagaggaacaaacagaccatataaggcaaggtgagagactatttat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 4580 acacggaaaccagaaagaggaacaaacagaccatataaggcaaggtgagagacaatcgat 4639
Query: 224 tacataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 tacataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatag 4699
Query: 284 tgctccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 tgctccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagt 4759
Query: 344 tcaagtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 tcaagtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaat 4819
Query: 404 tgtcagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 tgtcagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgt 4879
Query: 464 gttcttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccact 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 gttcttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccact 4939
Query: 524 tcacggtttcgccctacggttcccttgacatttggatttaccctaactccggaagttgtg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 tcacggtttcgccctacggttcccttgacatttggatttaccctaactccggaagttgtg 4999
Query: 584 atgtgaattatgatagcgccttcggcttacatcctgtcatcatgctggtaatactagcaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 atgtgaattatgatagcgccttcggcttacatcctgtcatcatgctggtaatactagcaa 5059
Query: 644 tgcttccttcttttntttcttgaagagccattgatgaccccgtgcaacgcgtacattttt 703
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 tgcttccttcttttttttcttgaagagccattgatgaccccgtgcaacgcgtacattttt 5119
Query: 704 tatggaaaattaaaagatggaaaatcggaatgtaatcggtgcatgattaagcaatgataa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 tatggaaaattaaaagatggaaaatcggaatgtaatcggtgcatgattaagcaatgataa 5179
Query: 764 tgagctacagcattgaacaaagaaagagggttcaagaagatggatttgcgtgtacgttac 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 tgagctacagcattgaacaaagaaagagggttcaagaagatggatttgcgtgtacgttac 5239
Query: 824 ggcttctgatattctttc-aagcccctgccagaagtaagaatggtttacatcaagatagc 882
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5240 ggcttctgatattctttcaaagcccctgccagaagtaggaatggtttacatcaagatagc 5299
Query: 883 gaggtagctcgaatttagggtcggaattt 911
||||||||||||||||||| |||||||||
Sbjct: 5300 gaggtagctcgaatttaggttcggaattt 5328
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6956
Number of Sequences: 1807
Number of extensions: 6956
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)