BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB07FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1469 0.0
>3x_Contig1766
Length = 23951
Score = 1469 bits (741), Expect = 0.0
Identities = 809/829 (97%), Gaps = 2/829 (0%)
Strand = Plus / Plus
Query: 91 aggctataacaacacttgttctaaataagatcaaaccataacatcaacaaggctttaatt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12444 aggctataacaacacttgttctaaataagatcaaaccataacatcaacaaggctttaatt 12503
Query: 151 tgacgatttcactccttattttgcattcacccagttcagattaagcttcatacaatacac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12504 tgacgatttcactccttattttgcattcacccagttcagattaagcttcatacaatacac 12563
Query: 211 cgtcatgagattaaattacgttttatcaaagaccttagctcttgcttccgttgtctctgc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12564 cgtcatgagattaaattacgttttatcaaagaccttagctcttgcttccgttgtctctgc 12623
Query: 271 tgctgccgttcataaacatcacgctgctgaagaaaaaagagacgttactgtcgtcgtaac 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12624 tgctgccgttcataaacatcacgctgctgaagaaaaaagagacgttactgtcgtcgtaac 12683
Query: 331 aaatttcgttgatcaaaatggtcaagtcttggttgacgggcaaacaagtgcgacagatgc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12684 aaatttcgttgatcaaaatggtcaagtcttggttgacgggcaaacaagtgcgacagatgc 12743
Query: 391 cacaacgaccttgcaaccagttactgatattggtggtggaaaaagtgttgaaactacaac 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12744 cacaacgaccttgcaaccagttactgatattggtggtggaaaaagtgttgaaactacaac 12803
Query: 451 ggtaacgtcatcatcaggttcatctagttctttatcgggttcctcaacctcttcctccgg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12804 ggtaacgtcatcatcaggttcatctagttctttatcgggttcctcaacctcttcctccgg 12863
Query: 511 tggaaccagttctagttctagttccacttctagcagcagtgacgcttctagttcaagttc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864 tggaaccagttctagttctagttccacttctagcagcagtgacgcttctagttcaagttc 12923
Query: 571 tggtgaatatggtggtgctttgggtatcacttactctccatacaccagcagtggttcttg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12924 tggtgaatatggtggtgctttgggtatcacttactctccatacaccagcagtggttcttg 12983
Query: 631 taagtcttcagacaccatcaaatccgacattcagaaattgtcacaattcagtgtcattag 690
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12984 taagtcttcagacaccatcaaatccgacattcagaatttgtcacaattcagtgtcattag 13043
Query: 691 aatctacgacactgactgtgacgcgatggaagcaattctatctcaattacaaagcggtca 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13044 aatctacgacactgactgtgacgcgatggaagcaattctatctcaattacaaagcggtca 13103
Query: 751 aaagatctttggttggtatttacgacatcgattacattgccttcagcgtcagtgcaaccg 810
|||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||| ||
Sbjct: 13104 aaagatcttt-gttggtatctacgacatcgataacattgcctccagcgtcagtgcaatcg 13162
Query: 811 aatctgttttcaacggtgatttctcccaggtttacgctatttctggcgggtacgaactga 870
|||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct: 13163 aatctgctttcaacggtgatttctccaaggtttacgctatttctgtcggtaacgaactga 13222
Query: 871 tcatggcagg-acggataccggtttttaactgagtagggctgttgaatc 918
||| ||||| ||| ||||| || | |||||||||| |||||||||||
Sbjct: 13223 tcaatgcaggaacgagtaccgtttctcaactgagtagcgctgttgaatc 13271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5835
Number of Sequences: 1807
Number of extensions: 5835
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)