BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB07RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1505 0.0
>3x_Contig1486
Length = 12131
Score = 1505 bits (759), Expect = 0.0
Identities = 850/875 (97%), Gaps = 4/875 (0%)
Strand = Plus / Plus
Query: 48 tacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaagtat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2967 tacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaagtat 3026
Query: 108 taagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3027 taagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtga 3086
Query: 168 acaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcatgggaaagc 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3087 acaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaagggaaagc 3146
Query: 228 tctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3147 tctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcac 3206
Query: 288 tagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 tagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaata 3266
Query: 348 ctctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 ctctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacat 3326
Query: 408 tggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaactta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3327 tggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaactta 3386
Query: 468 tagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3387 tagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaa 3446
Query: 528 ctgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3447 ctgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttc 3506
Query: 588 caatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttgcata 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3507 caatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttgcata 3566
Query: 648 cttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtgttat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3567 cttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtgttat 3626
Query: 708 ttaagagaa-cgagagacgcagccaacgatacaatcatacatgcgctttacgagcaactt 766
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3627 t-aagagaaacgagagacgcagccaacgatacaatcatacatgcgctttacgagcaactt 3685
Query: 767 ttagctttttgcacaaagctattgccaatcacacccttttctgactgggaagaattccaa 826
|||||||| ||||||||||||||||||| || |||||||||||||||||| | ||
Sbjct: 3686 ttagctttgcaacaaaagctattgccaatcacaaccatttctgactgggaagaatacgaa 3745
Query: 827 gagattatggat-cactcccacgtttatttcgtgaagctggcgaaacgtggggtgttttt 885
|||||||||||| ||||| |||||||||| ||||||||||||| ||||| ||||||||
Sbjct: 3746 gagattatggatccactcacacgtttattcgttgaagctggcgaagcgtggtgtgttttt 3805
Query: 886 cttggcaag-attctgccttattcaaacaattggt 919
|||| ||| || ||||||||||||||| ||||||
Sbjct: 3806 cttgcaaagaatcctgccttattcaaaccattggt 3840
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6719
Number of Sequences: 1807
Number of extensions: 6719
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)