BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB08RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1453 0.0
>3x_Contig1224
Length = 5948
Score = 1453 bits (733), Expect = 0.0
Identities = 842/871 (96%), Gaps = 7/871 (0%)
Strand = Plus / Plus
Query: 46 gctttgaagtccaaatcacgaactataagccgactgaacataaatttgcatgctgaagag 105
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 3890 gctttgaagtccaaatcacgaaccataagccgactgaacataaatttgcat-ctgaagag 3948
Query: 106 tcaaattgactccagttttcagtgaaagggttgatactatcacaagaacctacattactg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949 tcaaattgactccagttttcagtgaaagggttgatactatcacaagaacctacattactg 4008
Query: 166 ttcaaattccagtcagtactgttgcatccgcctattcggctaccagtaccgattttttga 225
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 4009 ttcaaattccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcagga 4068
Query: 226 ctattaatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4069 ctattaatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcg 4128
Query: 286 attttggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4129 attttggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaa 4188
Query: 346 ataaatgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4189 ataaatgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaa 4248
Query: 406 agcgacaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4249 agcgacaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaat 4308
Query: 466 aatcttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcacca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4309 aatcttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcacca 4368
Query: 526 ataatcgcagatatggtaatcaagcacgagaatgtacctgccaacgacatatctgagaat 585
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4369 ataatcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaat 4428
Query: 586 aaaacgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 aaaacgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggt 4488
Query: 646 tttaggtttataacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatgg 705
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 tttaggtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatgg 4548
Query: 706 aaattcgtgatcaaatggtaccaagcacgtgattcaatatangtttttccgtagagattt 765
||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||
Sbjct: 4549 aaattcgtgatcaaatggtaccaagtacgtgattcaatatagg-ttttccgtaaggattt 4607
Query: 766 tgaccattcaatctgtgtgaacttagtatatttcatatcccgcggtagatcggcatagtg 825
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4608 tgaccattcaatctgtgtgaacttagaatatttcatatcccgcggtagatcggcatagt- 4666
Query: 826 tggtaccttttttcaattaaaactgggttgatggtgttttaaatgaccagaaacattgat 885
||||||| | |||||||| ||||| |||| ||| ||||| |||||||||||||||||||
Sbjct: 4667 tggtaccatctttcaatttaaact-ggttaatg--gtttttaatgaccagaaacattgat 4723
Query: 886 taatcttcgccgcatcctataatttgggaat 916
|||| ||| || |||||||||| |||||||
Sbjct: 4724 taat-atcgtcgtatcctataatatgggaat 4753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7203
Number of Sequences: 1807
Number of extensions: 7203
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)