BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB09FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1509 0.0
>3x_Contig1697
Length = 16220
Score = 1509 bits (761), Expect = 0.0
Identities = 818/833 (98%), Gaps = 4/833 (0%)
Strand = Plus / Minus
Query: 87 caaaactaaacgatattaacgataagcagatcactggacccagatactggtactctgcac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 caaaactaaacgatattaacgataagcagatcactggacccagatactggtactctgcac 10406
Query: 147 agcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10405 agcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaaca 10346
Query: 207 agataatcacatttcgtgacaagagctgtacctcttccagctaaactagcagacaataac 266
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10345 agataatcacatcacgtgacaagagctgtacctcttccagctaaactagcagacaataac 10286
Query: 267 ttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10285 ttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaat 10226
Query: 327 gcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10225 gcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtact 10166
Query: 387 tagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10165 tagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaatt 10106
Query: 447 tgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtattc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10105 tgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtattc 10046
Query: 507 atgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10045 atgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccga 9986
Query: 567 cgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgagggcttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9985 cgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgagggcttt 9926
Query: 627 cctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgtaagttc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9925 cctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgtaagttc 9866
Query: 687 cggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcatgagagtt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9865 cggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcatgagagtt 9806
Query: 747 tacgcagtgattttgtgctgctactgctgggttcttttgttccctgtgagaatgcttttg 806
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 9805 tacgcagtgattttgtgctgctactgctgggttc-tttggtccctgtgagaatgcttttg 9747
Query: 807 gactgtcttgnttactgttttttatttgttttggncggtgaatagggatgnacgttggtc 866
|||||||||| |||||| |||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 9746 gactgtcttgtttactg-tttttatttgtttt-gtcggtgaata-ggattgacgttggtc 9690
Query: 867 agggaatgatagaccaaggacacccanacgtttctatattataatatatatat 919
|||||||||||||| ||||||| ||| |||| |||||||||||||||||||||
Sbjct: 9689 agggaatgatagacgaaggacaaccagacgtatctatattataatatatatat 9637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,888
Number of Sequences: 1807
Number of extensions: 16888
Number of successful extensions: 2543
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)