BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB10FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1489 0.0
3x_Contig1482 168 1e-41
3x_Contig1769 167 5e-41
3x_Contig1658 161 3e-39
3x_Contig340 157 5e-38
>3x_Contig1765
Length = 24733
Score = 1489 bits (751), Expect = 0.0
Identities = 814/831 (97%), Gaps = 3/831 (0%)
Strand = Plus / Minus
Query: 84 gcttcaaatcattagtttttttttt-aatatgaggaagaaacattccttcacatcgagca 142
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 17200 gcttcaaatcattagttttttttttcaatatgaggaagaaacattccttcacatcgagca 17141
Query: 143 gcaatggaagggatagataactattgtttcagcccgtttcacaacctctcctttcctgcg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17140 gcaatggaagggatagataactattgtttcagcccgtttcacaacctctcctttcctgcg 17081
Query: 203 atttaccgcgttattggaagatatgtttggaagttccccagagtgatttacttactaata 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17080 atttaccgcgttattggaagatatgtttggaagttccccagagtgatttacttactaata 17021
Query: 263 tgaaccactgtccaagtacttgtcacacggagcatatatgtagtcgcatgattatcatta 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17020 tgaaccactgtccaagtacttgtcacacggagcatatatgtagtcgcatgattatcatta 16961
Query: 323 cgttactgtaccccaaacttagtacaacagacatcaacaaatactaggcatcggtggttt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16960 cgttactgtaccccaaacttagtacaacagacatcaacaaatactaggcatcggtggttt 16901
Query: 383 agtggtaaaatccaacgttgccatcgttgggccccgggttcgattcccggccgatgcatt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16900 agtggtaaaatccaacgttgccatcgttgggccccgggttcgattcccggccgatgcatt 16841
Query: 443 ctttttcattattcaataatttattgagcactcaatttttttatcaagcgttgctaccta 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16840 ctttttcattattcaataatttattgagcactcaatttttttatcaagcgttgctaccta 16781
Query: 503 tttcataaactgaatccactatagcatttcgattcattcaatgcaaattcaatagtatcg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16780 tttcataaactgaatccactatagcatttcgattcattcaatgcaaattcaatagtatcg 16721
Query: 563 gtaaggtttcactaacggctctcgatgtgtttcttactcgttttctttttatgtacagaa 622
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16720 gtaaggtttcactaacggctctcgatgtgtttcttactcgttttcttttattgtacagaa 16661
Query: 623 aacccatctttacatttctcagcatgaatccaacattttgaaatcgaaagtgccaattca 682
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 16660 aacccatctttacaattctcagcatgaatccaacatttgaaaatcgaaagtgccaattca 16601
Query: 683 attgaaataagttaaaatgatgatgagaagttacaagtatattttgcgaagaatagtaga 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16600 attgaaataagttaaaatgatgatgagaagttacaagtatattttgcgaagaatagtaga 16541
Query: 743 tagatatcattgaacaaggtagttcaataacttgcctttggatacagacaagcacagacc 802
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 16540 tagatatcattgaacaaggtagttcaataacttgcctttgataacagacaagcacagacc 16481
Query: 803 aattggcaaccgccagtcatgattcatgcagtattaatatgtatgttaaatggttaccaa 862
|||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 16480 aattggcaacggccagtcatgattcatgcagtattaatatgtatg-taaagtgttaccaa 16422
Query: 863 gcaatacccta-aaaacaagctttactaccatttaatgatgatcccaatgc 912
||||||||||| ||| |||||||||||| |||||||||||||||| |||||
Sbjct: 16421 gcaataccctagaaatcaagctttactaacatttaatgatgatccaaatgc 16371
>3x_Contig1482
Length = 10060
Score = 168 bits (85), Expect = 1e-41
Identities = 97/101 (96%)
Strand = Plus / Plus
Query: 348 aacagacatcaacaaatactaggcatcggtggtttagtggtaaaatccaacgttgccatc 407
|||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7742 aacacacatcaataactactaagcatcggtggtttagtggtaaaatccaacgttgccatc 7801
Query: 408 gttgggccccgggttcgattcccggccgatgcattcttttt 448
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 gttgggccccgggttcgattcccggccgatgcattcttttt 7842
>3x_Contig1769
Length = 25795
Score = 167 bits (84), Expect = 5e-41
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 353 acatcaacaaatactaggcatcggtggtttagtggtaaaatccaacgttgccatcgttgg 412
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8285 acatcaaaaactactaagcatcggtggtttagtggtaaaatccaacgttgccatcgttgg 8344
Query: 413 gccccgggttcgattcccggccgatgcattcttttt 448
||||||||||||||||||||||||||||||||||||
Sbjct: 8345 gccccgggttcgattcccggccgatgcattcttttt 8380
>3x_Contig1658
Length = 13395
Score = 161 bits (81), Expect = 3e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 364 tactaggcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttc 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 tactaagcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttc 4228
Query: 424 gattcccggccgatgcattcttttt 448
|||||||||||||||||||||||||
Sbjct: 4229 gattcccggccgatgcattcttttt 4253
>3x_Contig340
Length = 1690
Score = 157 bits (79), Expect = 5e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 370 gcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttcgattcc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttcgattcc 306
Query: 430 cggccgatgcattcttttt 448
|||||||||||||||||||
Sbjct: 307 cggccgatgcattcttttt 325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8061
Number of Sequences: 1807
Number of extensions: 8061
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 5
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)