BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB10RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1316 0.0
>3x_Contig1794
Length = 36744
Score = 1316 bits (664), Expect = 0.0
Identities = 728/748 (97%), Gaps = 1/748 (0%)
Strand = Plus / Minus
Query: 48 aagataagagggagcaagcttggttaaaggaacacgaaaaaaggaaaaagaaactgaaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672 aagataagagggagcaagcttggttaaaggaacacgaaaaaaggaaaaagaaactgaaga 29613
Query: 108 aaagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612 aaagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatata 29553
Query: 168 caattaattaatgcattagttgaaatcatagatccaaatgaaatcaacattttgaagttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29552 caattaattaatgcattagttgaaatcatagatccaaatgaaatcaacattttgaagttt 29493
Query: 228 gtgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29492 gtgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaa 29433
Query: 288 gattatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29432 gattatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaa 29373
Query: 348 tcttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29372 tcttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatat 29313
Query: 408 gaatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgattg 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29312 gaatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgattt 29253
Query: 468 gaacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcagtga 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 29252 gaacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcaatga 29193
Query: 528 agacacatagaagaaagatttcacctggtcatgctcgaactcatatattgattctgaatt 587
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 29192 agaaacatagaagaaagatatcacctggtcatgctcgaactcatatattgattctgaatt 29133
Query: 588 ttgttcttcgagttcccaaaacttattcacgtcgttttctttccgaagaagaagaagtaa 647
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 29132 ttgttcttcgagttcccaaaacttattcacgtcg-tttctttccgaagaagaagaagtaa 29074
Query: 648 gtatggaagtgtcagtgtctattgagttgaaagacttacctgcatcttttaataaagatt 707
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 29073 gtatggaagtgtcagtgtctattgagttgtaggacttacctgcatctcttaataaagatt 29014
Query: 708 tcctaacttggacgtcgtcaattataccgaatgcatattggaacttccataaaagattaa 767
||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||| |
Sbjct: 29013 tcctagcttggacgtcgtcaattataccgaatgcaatttggaacttcgataagagatgat 28954
Query: 768 tgatggccattaataaggatgggttaaa 795
|||||| |||| || |||||||||||
Sbjct: 28953 agatggcaattatgaatgatgggttaaa 28926
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9566
Number of Sequences: 1807
Number of extensions: 9566
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)