BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB11FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1023 1467 0.0
>3x_Contig1023
Length = 4339
Score = 1467 bits (740), Expect = 0.0
Identities = 792/808 (98%), Gaps = 1/808 (0%)
Strand = Plus / Plus
Query: 89 ttaatggaaaagcactgaaagaggttccaagtcacggactgaaacgttcccaacacctac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ttaatggaaaagcactgaaagaggttccaagtcacggactgaaacgttcccaacacctac 940
Query: 149 ttctacttttccttcttgctaagaacaaacctgaataaaactaccttatacttatattaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ttctacttttccttcttgctaagaacaaacctgaataaaactaccttatacttatattaa 1000
Query: 209 tttcaaaacacattgtgaattttggattttcttcttttacgtctctgcaactgtgttctt 268
|||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1001 tttcaaaacacaatgtgaatttttgtttttcttcttttacgtctctgcaactgtgttctt 1060
Query: 269 caaaataatactctcaggtaacaaacaacagaacaaagaaatgaatcatttcccgtgaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 caaaataatactctcaggtaacaaacaacagaacaaagaaatgaatcatttcccgtgaat 1120
Query: 329 ttttttctcaattctgtattctacttgtgcttcaattattatgacaattcctgtaatccc 388
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1121 ttttttctcaattctgtattctacttgtgcgtcaattattatgacaattcctgtaatccc 1180
Query: 389 ccaatccccctataagcacccgtctcataacttacttgaaatcctctgccaaaatcatta 448
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1181 ccaatccccctataagcacccgtctcataacttacttgaaatcctctgcgaaaatcatta 1240
Query: 449 ccacacgcactcaggcatacagaacaatcctaaggtgcatcgttttctgttcgtagttgc 508
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1241 ccacacgcactcaggcatacaggacaatcctaaggtgcatcgttttctgttcgtagttgc 1300
Query: 509 tttattttccttcattattttttttgtttttgtttgacgtgaccttctttgtgctacagt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1301 tttattttccttcattattttttttgtttttgtttgacgtgaccttctttgtgctacagt 1360
Query: 569 ttctagccgttgtgactttgttacttaaagtcttcttgacacgctctgttgaaatgaaca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 ttctagccgttgtgactttgttacttaaagtcttcttgacacgctctgttgaaatgaaca 1420
Query: 629 aaaaagcccaaaaaaagaagagaaataagctcgaaaaatactgctatgtcaatttaataa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 aaaaagcccaaaaaaagaagagaaataagctcgaaaaatactgctatgtcaatttaataa 1480
Query: 689 aaaagggaaggagaaagagagcgcactatgaaaggactaagatatcagtgaaaaacgttg 748
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1481 aaaagggaaggagaaagagagcgcacgatgaaaggactaagatatcagtgaaaaacgttg 1540
Query: 749 ctaattcgttgtccaacacactcttatgtgggctctttttttgtgctttgcattgatgcc 808
|||||||||||||||||| ||| |||| |||||||||||||||||||| ||||||||||
Sbjct: 1541 ctaattcgttgtccaacaaacttttatttgggctctttttttgtgcttgccattgatgcc 1600
Query: 809 ttcacgggatgcctgattggtattaa-ttgagagcgaagacggaaagttgctttgttttg 867
|||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct: 1601 ttcacgggatgcctgattggtattaatttgagagcgaagacggaaagttccttttttttg 1660
Query: 868 tccatgcaacaaaagtttgcctattatg 895
|||||||| |||||||||||||||||||
Sbjct: 1661 tccatgcagcaaaagtttgcctattatg 1688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8607
Number of Sequences: 1807
Number of extensions: 8607
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)