BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZB11RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig690 1324 0.0
>3x_Contig690
Length = 2822
Score = 1324 bits (668), Expect = 0.0
Identities = 785/815 (96%), Gaps = 7/815 (0%)
Strand = Plus / Plus
Query: 42 atacataggatatagcttattgtatgcaagccgactatcgagctcaaacaatatcctgct 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 atacataggatatagcttattgtatgcaagccgactatcgagctcaaacaatatcctgct 1251
Query: 102 aaccatcttcttttgtgggaagatctcatgcaatggtggccgtttgttggctaaactgga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 aaccatcttcttttgtgggaagatctcatgcaatggtggccgtttgttggctaaactgga 1311
Query: 162 aatcagtctcctgcttgataccaagatacagcttctaaaaccaagcatctcgaacaaaaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 aatcagtctcctgcttgataccaagatacagcttctaaaaccaagcatctcgaacaaaaa 1371
Query: 222 cagttttagctctcgggtatatcagaagattcgaataaagcctggaagatctcacaaaag 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 cagttttagctctcgggtatatcagaagattcgaataaagcctggaagatctcacaaaag 1431
Query: 282 cctaacgttctgcttaatcctgtaggtctgcctttgatccatttgtgcgtaagaacttga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 cctaacgttctgcttaatcctgtaggtctgcctttgatccatttgtgcgtaagaacttga 1491
Query: 342 tgatgtatttggttttgatcctttcctggttaaaattcgagtttctataaaatgattctt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 tgatgtatttggttttgatcctttcctggttaaaattcgagtttctataaaatgattctt 1551
Query: 402 taccaaccgttacacataatcggataaggtccgattatttaagttaaaggcatgaaagta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 taccaaccgttacacataatcggataaggtccgattatttaagttaaaggcatgaaagta 1611
Query: 462 ggtgtcaatacacaatcaatatctatcaatggtgctaaaattccaagctaattgtcgctc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 ggtgtcaatacacaatcaatatctatcaatggtgctaaaattccaagctaattgtcgctc 1671
Query: 522 tttgattcgaccattgttttcacgtttttattcggctcctgttgattattcgcatgctgn 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 tttgattcgaccattgttttcacgtttttattcggctcctgttgattattcgcatgctgt 1731
Query: 582 tatcggtgcaggtgtagtcggactggctattgccaacgaacttaccaaagttccaggcaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1732 tatcggtgcaggtgtagtcggactggctattgccaacgaacttaccaaagtcccaggcaa 1791
Query: 642 taaagtgattgtttttgagaagaaatgc-aagattggccaagaaacttcgagccgtaata 700
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 1792 taaagtgattgttttggagaag-aatgcaaagattggccaagaaacttcgagccgtaata 1850
Query: 701 ttgaagtgattcatgctggtttgtattacccagttgatttcttaaaaacgagtttttgtt 760
||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct: 1851 gtgaggtgattcatgctggtttgtattacccagtagattcgttaaaaacgaagttttgta 1910
Query: 761 ttg-aggaaacc-ttttatattcaattgattgaaatcccaggaagattgtggtcgattgg 818
||| |||||||| | | |||| |||| |||| ||||||||||||| || |||||||||
Sbjct: 1911 ttgaaggaaaccatatcatatacaatgaattg-aatcccaggaagactggtgtcgattgg 1969
Query: 819 cttgaaagtggttaagtggggttgtggcccaaact 853
|| || |||| ||||| |||||||||| ||||||
Sbjct: 1970 ctgaaatgtgg-taagt-gggttgtggcacaaact 2002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6532
Number of Sequences: 1807
Number of extensions: 6532
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)