BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC01RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1302 0.0
>3x_Contig1794
Length = 36744
Score = 1302 bits (657), Expect = 0.0
Identities = 715/725 (98%), Gaps = 7/725 (0%)
Strand = Plus / Minus
Query: 49 aagataagagggagcaagcttggttaaaggaacacgaaaaaaggaaaaagaaactgaaga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672 aagataagagggagcaagcttggttaaaggaacacgaaaaaaggaaaaagaaactgaaga 29613
Query: 109 aaagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612 aaagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatata 29553
Query: 169 caattaattaatgcattagttgaaatcatagatccaaatgaaatcaacattttgaagttt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29552 caattaattaatgcattagttgaaatcatagatccaaatgaaatcaacattttgaagttt 29493
Query: 229 gtgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29492 gtgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaa 29433
Query: 289 gattatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29432 gattatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaa 29373
Query: 349 tcttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29372 tcttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatat 29313
Query: 409 gaatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgattt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29312 gaatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgattt 29253
Query: 469 gaacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcaatga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29252 gaacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcaatga 29193
Query: 529 agaaacatagaagaaagatatcacctggtcatgctcgaactcatatattgattctgaatt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29192 agaaacatagaagaaagatatcacctggtcatgctcgaactcatatattgattctgaatt 29133
Query: 589 ttgttcttcgagttcccaaaacttattcacgtcgtttctttccgaagaagaagaag-aag 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 29132 ttgttcttcgagttcccaaaacttattcacgtcgtttctttccgaagaagaagaagtaag 29073
Query: 648 tatgggagtgtcagtgtctattgagttgtaggacttacctgcatctctttattaaagatt 707
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 29072 tatggaagtgtcagtgtctattgagttgtaggacttacctgcatctc-ttaataaagatt 29014
Query: 708 ccctagctttggacgtcgtcaattattaccgaaatgcaatttggaaacttcgattaagag 767
|||||| ||||||||||||||||| ||||| |||||||||||| |||||||| ||||||
Sbjct: 29013 tcctagc-ttggacgtcgtcaatta-taccg-aatgcaatttgg-aacttcga-taagag 28959
Query: 768 atgat 772
|||||
Sbjct: 28958 atgat 28954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,615
Number of Sequences: 1807
Number of extensions: 10615
Number of successful extensions: 290
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)