BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC02FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig612 803 0.0
3x_Contig1650 551 e-157
>3x_Contig612
Length = 1930
Score = 803 bits (405), Expect = 0.0
Identities = 475/497 (95%), Gaps = 1/497 (0%)
Strand = Plus / Plus
Query: 87 ctctctacttttcctgcaaagctacggatgaacaaggtaaagttaggtttatgttagttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 ctctctacttttcctgcaaagctacggatgaacaaggtaaagttaggtttatgttagttt 1012
Query: 147 acaggcacttgatgcaacataatttgaaggcggctttcaaactgtatccatttgttttga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 acaggcacttgatgcaacataatttgaaggcggctttcaaactgtatccatttgttttga 1072
Query: 207 acgaattaagaatattatcgaaatattccaataatagctccacagtgcttttatcatttg 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 acgaattaagaagattatcgaaatattccaataatagctccacagtgcttttatcatttg 1132
Query: 267 agatcataaagatggcagtaaaaagtaaagaatacctaaaattgccaatgattgagaaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 agatcataaagatggcagtaaaaagtaaagaatacctaaaattgccaatgattgagaaag 1192
Query: 327 aaatgtataagaaacttgaagaaagaggcctaactggaatcaaaagcattccgtttgaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 aaatgtataagaaacttgaagaaagaggcctaactggaatcaaaagcattccgtttgaaa 1252
Query: 387 atgaacttgcgaatgatgtattgactggggttagggaaaaccctattatcacctacg-ag 445
||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||
Sbjct: 1253 atgaacttgcgaatgatgtattgactggggttagggaaaaccctattataaaataagcag 1312
Query: 446 agaaagaagttggctgtcatgttactttctaaagtaatatcttctgcatcagagcgataa 505
|||||||||||||||||||||||||||||||||||||||| || || || ||||||||||
Sbjct: 1313 agaaagaagttggctgtcatgttactttctaaagtaatatattatgaataagagcgataa 1372
Query: 506 aacacaaattgtacgtatattgaacgaaagtataaattagaacacatttaagactaatat 565
|| | |||||||| |||||||||| |||||||||||| | || | |||||| | ||||||
Sbjct: 1373 aaaaaaaattgtaagtatattgaaagaaagtataaataataaaaaatttaataataatat 1432
Query: 566 cttttatttaaattatt 582
||| ||||||||||||
Sbjct: 1433 atttaatttaaattatt 1449
>3x_Contig1650
Length = 11257
Score = 551 bits (278), Expect = e-157
Identities = 332/345 (96%), Gaps = 4/345 (1%)
Strand = Plus / Minus
Query: 567 ttttatttaaattattgattcctgatcgagggtcgttttgaatagtttcaagttagatcc 626
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11252 ttttatttaaattattgattc-tgatcgagggtcgttttgaatagtttcaagttagatcc 11194
Query: 627 accttgaactattattggttggttccagaaagcgattagctttgttaaatctgtagaaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11193 accttgaactattattggttggttccagaaagcgattagctttgttaaatctgtagaaaa 11134
Query: 687 tagcaagttctactttctattcaaaa-ttacgagaatgcagtggtattacagcagaagga 745
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 11133 tagcaagttctactttctattcaaaatttacgagaatgcagtggtattacagcagaagga 11074
Query: 746 gatttactcctgggttggctttgaagggccaaaactgttttttatgtaatttttcaaatt 805
||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct: 11073 gatttactcctgggttggctttgaa-ggcccaaactgtttgttatgtaatttttcaaatt 11015
Query: 806 ccagcttatccgaattgtacaggagcattgtcgctcttgcatcttccgatggaactatgc 865
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 11014 ccagcttatccgatttgtacaggagcattgtcgctcttgcatctt-cgatggaactatgc 10956
Query: 866 tcaccggcttggatatttaactgnaaaatttctttccttaatttc 910
|||||| |||| |||| |||||| |||||||||||| ||| ||||
Sbjct: 10955 tcaccgtcttgaatatctaactgtaaaatttctttcgttagtttc 10911
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7656
Number of Sequences: 1807
Number of extensions: 7656
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)