BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC02RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig340 1233 0.0
>3x_Contig340
Length = 1690
Score = 1233 bits (622), Expect = 0.0
Identities = 652/658 (99%), Gaps = 3/658 (0%)
Strand = Plus / Minus
Query: 73 atcgatttgtttcgaagacaatattattattagatggcatctacttaaaagagttttgga 132
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 atcgatttgtttcgaagaca-tattattattagatggcatctacttaaaagagttttgga 1632
Query: 133 taaataacagcaatgatacaaaagataataaaagggaaaagtaatctttaagtttaaggt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1631 taaataacagcaatgatacaaaagataataaaagggaaaagtaatctttaagtttaaggt 1572
Query: 193 attgaatgataaacaagccaggaaggagtataaaagaagtatttgaatagaaaacttgag 252
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1571 attgaatgataaacaagccaggaaggagtagaaaagaagtatttgaatagaaaacttgag 1512
Query: 253 attaaatcataatatggaagaaaagggaactcagaataggaaaagaaagaaaaagaagga 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 attaaatcataatatggaagaaaagggaactcagaataggaaaagaaagaaaaagaagga 1452
Query: 313 gaaggccatgtaataggaaatgcgtaaagaaagaatgaaaagaatgcagtttaaggtgta 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 gaaggccatgtaataggaaatgcgtaaagaaagaatgaaaagaatgcagtttaaggtgta 1392
Query: 373 attagactagaatcaattatcaaaatgacaccatttgctgccacgtccactgttttaact 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 attagactagaatcaattatcaaaatgacaccatttgctgccacgtccactgttttaact 1332
Query: 433 agtttgaagtccatgtttgaagctgacgcaacgaaatattcgttattctgtcttttcaac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 agtttgaagtccatgtttgaagctgacgcaacgaaatattcgttattctgtcttttcaac 1272
Query: 493 acaatgtcacccttttcagaggtgtctgcctcgctatgtaaccagatttcgtctgattcc 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 acaatgtcacccttttcagaggtgtctgcctcgctatgtaaccagatttcgtctgattcc 1212
Query: 553 aaatcgaaatcatcagaatgtgccactatatgagatttcacaaagtgtgctacattctct 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 aaatcgaaatcatcagaatgtgccactatatgagatttcacaaagtgtgctacattctct 1152
Query: 613 tttatagcatcgtcgatttgttttggttctgcattcgattgttccatggcatcgatatta 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 tttatagcatcgtcgatttgttttggttctgcattcgattgttccatggcatcgatatta 1092
Query: 673 tttgggaactgccaaattttcatcgaaagtttttgaaatggcatcgtttcgttggtgc 730
||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct: 1091 tttgggaactgccaaggtttcatcgaaag-ttttgaaatggcatcg-ttcgttggtgc 1036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,208
Number of Sequences: 1807
Number of extensions: 11208
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)