BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC04FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1457 0.0
>3x_Contig1739
Length = 22061
Score = 1457 bits (735), Expect = 0.0
Identities = 804/817 (98%), Gaps = 8/817 (0%)
Strand = Plus / Minus
Query: 93 acacagttgtggcaaatgtttggtgaaggtaagattgatagattcaacaatattttactg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2739 acacagttgtggcaaatgtttggtgaaggtaagattgatagattcaacaatattttactg 2680
Query: 153 aataaattggcgccatatctttcatcaaacgcatttcaatactggttcgaaaatggaacg 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2679 aataaattggcgccatatctttcatcaaacgcatttcaatactggttcgaaaatggaacg 2620
Query: 213 aaaacatttgatcctaatggagccgggttgtatgacactgggttcacaaagtgggcatta 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2619 aaaacatttgatcctaatggagccgggttgtatgacactgggttcacaaagtgggcatta 2560
Query: 273 agacttgcaaaatgggtattcaaagttgcaaatcttacagatgaagttaatatgctatgc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2559 agacttgcaaaatgggtattcaaagttgcaaatcttacagatgaagttaatatgctatgc 2500
Query: 333 aaagctaagaccctagaggagcaaagatctatttgggataaaaagataaagccggtcctt 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2499 aaagctaagaccctagaggagcaaagatctatttgggataaaaagataaagccggtcctt 2440
Query: 393 ttcaacagagtagtgggtaaaatcctcgttggaaacccgttatttttatggagtgcactt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2439 ttcaacagagtagtgggtaaaatcctcgttggaaacccgttatttttatggagtgcactt 2380
Query: 453 ggagtaccacgtaatcaagcaaaaatgatgggctcttcaacattgcaatatattattgac 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2379 ggagtaccacgtaatcaagcaaaaatgatgggctcttcaacattgcaatatattattgac 2320
Query: 513 actttggaccctgttattgataattctttgatttccgatgataattacttttattatttg 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2319 actttggaccctgttattgataattctttgatttccgatgataattacttttattatttg 2260
Query: 573 acattgaagggaagatattcgagtagaagttgtcctgattacct-aaaagagggtggatt 631
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2259 acattgaagggaagatattcgagtagaagttgtcctgattacctgaaaagagggtggatt 2200
Query: 632 caagtctctttctcgtgaaagtcctgaatctcctctagatagagttagacttcatactga 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2199 caagtctctttctcgtgaaagtcctgaatctcctctagatagagttagacttcatactga 2140
Query: 692 cacgttgaaggatgtctgtgagcgtttgtcgaag-aaacagtttcgattgctataattat 750
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2139 cacgttgaaggatgtctgtgagcgtttgtcgaagaaaacagtttcgattgctataattat 2080
Query: 751 ggatcacatggatttggtttgatccacaaggaactgatgttgacgaagaaattcangctt 810
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2079 ggatcacatgga-ttggtttgatccacaaggaactgatgttgacgaagaaattcaggctt 2021
Query: 811 tgtggnttggccctcaacttctcgcggtagggttattattgaagatctgccttctaaagc 870
||||| |||||||||||| ||||||||||||| |||||||| ||||||||| ||||||
Sbjct: 2020 tgtgg-ttggccctcaac-tctcgcggtaggg-tattattg-agatctgcc-tctaaaag 1966
Query: 871 cccatgttatatcaaaaacttcgnaaagttcggcttc 907
|||||| |||||||||||||||| |||||||||||||
Sbjct: 1965 cccatggtatatcaaaaacttcgaaaagttcggcttc 1929
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6535
Number of Sequences: 1807
Number of extensions: 6535
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)