BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC04RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1473 0.0
>3x_Contig1769
Length = 25795
Score = 1473 bits (743), Expect = 0.0
Identities = 800/817 (97%), Gaps = 2/817 (0%)
Strand = Plus / Minus
Query: 48 cgaccttagtgtacgaaccttggtttgagaaaagcacctttttccattgagattagagac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13397 cgaccttagtgtacgaaccttggtttgagaaaagcacctttttccattgagattagagac 13338
Query: 108 aaaaccatgtcatagggataatgacgactgccgttacttgcattctttcggtatgtatga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13337 aaaaccatgtcatagggataatgacgactgccgttacttgcattctttcggtatgtatga 13278
Query: 168 aaccatatcagttattgtacatggaaaaagagggaagtgtggaaattatttgcaaaacat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13277 aaccatatcagttattgtacatggaaaaagagggaagtgtggaaattatttgcaaaacat 13218
Query: 228 gcgtatacgtttcagcagctacgtaatactcatctggacccgttgttaagaacgatactt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13217 gcgtatacgtttcagcagctacgtaatactcatctggacccgttgttaagaacgatactt 13158
Query: 288 cgattgttccatatttcttaatgctttttgatgcaacatttttgattcattcatgagagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13157 cgattgttccatatttcttaatgctttttgatgcaacatttttgattcattcatgagagg 13098
Query: 348 cattttctgcgtgttacatcatattgcttcttgttcccttttttttcagttcttcggatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13097 cattttctgcgtgttacatcatattgcttcttgttcccttttttttcagttcttcggatg 13038
Query: 408 ctttgcgtaaaatgccagagtgcaagtgaaatttacttggcgaagtatctaaaagacgcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13037 ctttgcgtaaaatgccagagtgcaagtgaaatttacttggcgaagtatctaaaagacgcc 12978
Query: 468 atgcaagcattcggggcttcaaaaccctcgccccttgatttgacctttatgatcgttaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12977 atgcaagcattcggggcttcaaaaccctcgccccttgatttgacctttatgatcgttaag 12918
Query: 528 tcgttatccccgatgatagatgtcatatttgtggaagtactagcanaactggaagctgac 587
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12917 tcgttatccccgatgatagatgtcatatttgtggaagtactagcaaaactggaagctgac 12858
Query: 588 acattgtcatggcggccagggctatctggccaaaagtagtcatttctatggccaccccaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12857 acattgtcatggcggccagggctatctggccaaaagtagtcatttctatggccaccccaa 12798
Query: 648 taagctgntagtattatcttcgagaaaaggtttgaattttattattggaacgcgttcatt 707
||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 12797 taagctgtaagtattatctccgagaaaaggtttgaattttataattggaacgcgttcatt 12738
Query: 708 ttgtacttttctgtctacatgaaatatccattatgagtgtattagggtactggtggatac 767
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 12737 ttgtacttttctgtctacatgaaatatccattatgagtgtattaggtaactggtgataac 12678
Query: 768 ttacgcagtacccactttaggaacatatccttttctgttgcaaagataggatttattggt 827
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 12677 ttacgcagtacccacttcaggaacatatccatttctgtggcaaagataggatttattggt 12618
Query: 828 accaggttgctggaatggaagatcccttagatccttc 864
| |||||||||| ||| |||||||| |||||||||||
Sbjct: 12617 a-caggttgctgtaat-gaagatccgttagatccttc 12583
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6718
Number of Sequences: 1807
Number of extensions: 6718
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)