BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC06FM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1510 1409 0.0
>3x_Contig1510
Length = 10278
Score = 1409 bits (711), Expect = 0.0
Identities = 781/800 (97%), Gaps = 4/800 (0%)
Strand = Plus / Minus
Query: 86 cactctttgttacggttacagcaggttagtctgaccaggtatagaactgttagcaaacct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9972 cactctttgttacggttacagcaggttagtctgaccaggtatagaactgttagcaaacct 9913
Query: 146 aaggctcctcctggtggtagagggacgtttggcgggatattggtttcacaatcgctttta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9912 aaggctcctcctggtggtagagggacgtttggcgggatattggtttcacaatcgctttta 9853
Query: 206 gcttctttgcagacaattccggtagatttcaacccgagttcgttgcattgttatttcctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9852 gcttctttgcagacaattccggtagatttcaacccgagttcgttgcattgttatttcctt 9793
Query: 266 atcggaggtaacccagaccatgatatcgattacgatgtagaatcattacgttctggtaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9792 atcggaggtaacccagaccatgatatcgattacgatgtagaatcattacgttctggtaag 9733
Query: 326 aatttcattcataaacaggtaaaggcgtaccagtttgacaaactgatattcatttcgacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9732 aatttcattcataaacaggtaaaggcgtaccagtttgacaaactgatattcatttcgacg 9673
Query: 386 atcttgttctacagacaaccggaccctgataagctacatgcgttgaatagacttggcaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9672 atcttgttctacagacaaccggaccctgataagctacatgcgttgaatagacttggcaag 9613
Query: 446 ttgcccaagttaccagatttcaagaaattccgtgaatcgacacagttgttcgagaaccag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9612 ttgcccaagttaccagatttcaagaaattccgtgaatcgacacagttgttcgagaaccag 9553
Query: 506 gtgatgggcaagctgcccaatttcaaacgtgtatcaacagtatttcaaggctctgatgcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9552 gtgatgggcaagctgcccaatttcaaacgtgtatcaacagtatttcaaggctctgatgcc 9493
Query: 566 gagaccaagaagctccgtgatcgattcgaaacaggtaccgttgattaccggttcccggac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9492 gagaccaagaagctccgtgatcgattcgaaacaggtaccgttgattaccggttcccggac 9433
Query: 626 aacttctttgttaatgagtcagattcagatgagttggattattacttacgtgtgcgtgag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432 aacttctttgttaatgagtcagattcagatgagttggattattacttacgtgtgcgtgag 9373
Query: 686 aatatacctgcaagtggagttcctggtttctccccaaacgcagatataagcccggagaaa 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9372 aatatacctgcaagtggagttcctggtttctccccaaacgcagatataagcccggagaat 9313
Query: 746 gatgttcgttttaactatgtcgcatttgcgtatcttttctgactcgtac-ttctnatatc 804
|||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct: 9312 gatgttcgttttaactatgtcgcatttgcgtatc-tttctgactcgtacgttctattatc 9254
Query: 805 attgccatttttccatattttcncaatgta-tcacacagattcagggtggnctttgggat 863
||||||||||||||||| | | ||||||| ||||||| ||||| || | ||||||
Sbjct: 9253 attgccatttttccataatcttccaatgtattcacacaagttcagtgt-gtctttggatc 9195
Query: 864 atactattcatttccatcaa 883
||||||| ||||||||||||
Sbjct: 9194 atactatccatttccatcaa 9175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4692
Number of Sequences: 1807
Number of extensions: 4692
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)