BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1136 1421 0.0
>3x_Contig1136
Length = 5035
Score = 1421 bits (717), Expect = 0.0
Identities = 817/840 (97%), Gaps = 8/840 (0%)
Strand = Plus / Plus
Query: 87 acttgacagatttggtaagtactggtcaaactttcaattcttcgcaaatcgtcagtgaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 acttgacagatttggtaagtactggtcaaactttcaattcttcgcaaatcgtcagtgaga 1027
Query: 147 atgttcgtttcacttctggaactctcgttgttggtttaatctcgatttatttcatttatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 atgttcgtttcacttctggaactctcgttgttggtttaatctcgatttatttcatttatc 1087
Query: 207 aatgggtgttcagtaagagcaaactgccatctgcggtccagttcaaactatatatccctg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 aatgggtgttcagtaagagcaaactgccatctgcggtccagttcaaactatatatccctg 1147
Query: 267 atgcagctcacaaacattggaagggtaagcggatgtttccttgctctgtttataacccag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 atgcagctcacaaacattggaagggtaagcggatgtttccttgctctgtttataacccag 1207
Query: 327 agcaaccccatatgatccaatcttattgtccagcgacaggccaattcctaggttcattta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 agcaaccccatatgatccaatcttattgtccagcgacaggccaattcctaggttcattta 1267
Query: 387 agtctatgtctgatactgatatcgatgaaatcgttctattggcagaaagagcacaattac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 agtctatgtctgatactgatatcgatgaaatcgttctattggcagaaagagcacaattac 1327
Query: 447 aatgggccaagacttcattaaaggaaaggctgcaagttctattatctttgaaaaatttca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 aatgggccaagacttcattaaaggaaaggctgcaagttctattatctttgaaaaatttca 1387
Query: 507 tcttggagaatcaagaagccattgctcgcgtcgcatgtagggactcagggaaaaccatgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 tcttggagaatcaagaagccattgctcgcgtcgcatgtagggactcagggaaaaccatgt 1447
Query: 567 tagatgcttcaatgggtgagattctggttacattagaaaagattcagtggattattgaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448 tagatgcttcaatgggtgagattctggttacattagaaaagattcagtggattattgaac 1507
Query: 627 atggagaagatgttttgaagccaagc-gcccgccctggacccactaacttcttcatgaaa 685
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1508 atggagaagatgttttgaagccaagcggcccgccctggacccactaacttcttcatgaaa 1567
Query: 686 tggtacaaaggtgcagaggtccgttacgagccattggggtgttgttgggggcgattgttt 745
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct: 1568 tggtacaaaggtgcagaggtccgttacgagccatt-gggtgttgtt-ggggcgattgtct 1625
Query: 746 cttggaattattctttccacaactaatttaggcctattgttgcttccatatt-actggta 804
||||||||||| |||||||||||| ||| ||||||| |||||||| ||||| |||||||
Sbjct: 1626 cttggaattatcctttccacaacttattagggcctatagttgcttcgatattcactggta 1685
Query: 805 atggccgntgttgtaaaatgttctg-accagtcgtatggtccagtaagtttttcactctt 863
|| |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 1686 at-gccgttgttgtaaaatgttctgaacaagtcgtatggtccagtaagtttttcactctt 1744
Query: 864 ttaattacgggaagccttaaaagctttgggtcctgaccccaaacctcgttcaattatgtt 923
|| | ||| |||||| |||||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 1745 tt-agtacaggaagcattaaaagcttgtggtcatgacccc-aacctcgttcaattatgtt 1802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6247
Number of Sequences: 1807
Number of extensions: 6247
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)