BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC11FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig672 1390 0.0
>3x_Contig672
Length = 2319
Score = 1390 bits (701), Expect = 0.0
Identities = 788/804 (98%), Gaps = 10/804 (1%)
Strand = Plus / Plus
Query: 88 cggtgacgattctactgacggtacgtccatgttaacgtccccatcttcatctttcatttc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 cggtgacgattctactgacggtacgtccatgttaacgtccccatcttcatctttcatttc 1452
Query: 148 atgtgaatcagatacgccttcattgaccacagtggtagttttttcatcaacattctgaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 atgtgaatcagatacgccttcattgaccacagtggtagttttttcatcaacattctgaat 1512
Query: 208 agcgctgtcatcattatcttcttcttgaatagcgttattacttttagaactgttttctcg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 agcgctgtcatcattatcttcttcttgaatagcgttattacttttagaactgttttctcg 1572
Query: 268 agaaatttcctcgaggagtgtctcttcatgtatgtctgcaaatttggtaccagtacctct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1573 agaaatttcctcgaggagtgtctcttcatgtatgtctgcaaatttggtaccagtacctct 1632
Query: 328 ctgttgcaacatcagtggaataaactgctcaagcggcatctgaccaaagtactcatacgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1633 ctgttgcaacatcagtggaataaactgctcaagcggcatctgaccaaagtactcatacgg 1692
Query: 388 gttctgaattaatgatttttgcgactttgcattatcagcatcgtcagctgcaaatactgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 gttctgaattaatgatttttgcgactttgcattatcagcatcgtcagctgcaaatactgt 1752
Query: 448 ggcatcttcattgttaacaccttcgtcaccgttaccattagtcgttaatgaagtagacac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 ggcatcttcattgttaacaccttcgtcaccgttaccattagtcgttaatgaagtagacac 1812
Query: 508 cggaatactaattaaattaggatcaattgccaagggtatacccttttcagggtcatattc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 cggaatactaattaaattaggatcaattgccaagggtatacccttttcagggtcatattc 1872
Query: 568 tgagaagccatccatttaacactcgaatgtacttcacttttgcagttccaaattttcgta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 tgagaagccatccatttaacactcgaatgtacttcacttttgcagttccaaattttcgta 1932
Query: 628 gtaattactcctggttatatctttatattcagaatcatcctttcactgttttctatcgag 687
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1933 gtaattactcctggttatatctttatattcagattcatcctttcactgttttctatcgag 1992
Query: 688 tatcttgttgtcttttgttgaagttaactttg-atttcattttcatgtcaaagaaaacag 746
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1993 tatcttgttgtcttttgttgaagttaacattgaatttcattttcatgtcaaagaaaacag 2052
Query: 747 gaaccagaacgggaaagaaaaaaacgtaagtatggatggcaatcagagtacttgctcaaa 806
||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 2053 gaa-cagaacgggaaagaaaaagacgtaagtatggatggc-atcagagtacatgctcaaa 2110
Query: 807 ggnaagctttggtggtaaaaggattgaagaagcttggccgtttttggaagttcgaatgaa 866
|| |||| ||||| |||||||||||| |||||||||| ||||||| ||||| |||||| |
Sbjct: 2111 ggaaagc-ttggt-gtaaaaggattg-agaagcttgg-cgttttt-gaagtacgaatg-a 2164
Query: 867 ttaattaacttatacaatttattt 890
||||||||| ||||||||||||||
Sbjct: 2165 ttaattaac-tatacaatttattt 2187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7873
Number of Sequences: 1807
Number of extensions: 7873
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)