BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC24ZC11RM1.SCF screened BAC_end (955 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig506 672 0.0 >3x_Contig506 Length = 1733 Score = 672 bits (339), Expect = 0.0 Identities = 342/343 (99%) Strand = Plus / Minus Query: 47 tgaacctgcaacaattctaccttcatttaacaaatatagattacgtctgtccttttcacc 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 tgaacctgcaacaattctaccttcatttaacaaatatagattacgtctgtccttttcacc 284 Query: 107 tggtgccttaccaagaacttcttttctcttctcggcatttctctcaaacattcttccagc 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 tggtgccttaccaagaacttcttttctcttctcggcatttctctcaaacattcttccagc 224 Query: 167 agattctctatcaagagttggagaaattgcaagaacacgaccctcataaacatactctgg 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 agattctctatcaagagttggagaaattgcaagaacacgaccctcataaacatactctgg 164 Query: 227 ggaaacatcatcacttattagaagggatgtacttcctgtagcaggagcattatttagaca 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 ggaaacatcatcacttattagaagggatgtacttcctgtagcaggagcattatttagaca 104 Query: 287 gtcgttgtaagcatcttcgcttctgaatgcaacgaaagcagtacccttcgccaaaccagt 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 103 gtcgttgtaagcatcttcgcttctgaatgcaacgaaagcagtacccttcgccaaaccagt 44 Query: 347 ttctttatcaatcactggcaaagcgtattttactgggccgaac 389 || |||||||||||||||||||||||||||||||||||||||| Sbjct: 43 ttttttatcaatcactggcaaagcgtattttactgggccgaac 1 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,096 Number of Sequences: 1807 Number of extensions: 12096 Number of successful extensions: 779 Number of sequences better than 1.0e-20: 1 length of query: 955 length of database: 10,358,551 effective HSP length: 16 effective length of query: 939 effective length of database: 10,329,639 effective search space: 9699531021 effective search space used: 9699531021 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)