BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZC12FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1435 0.0
>3x_Contig1657
Length = 14558
Score = 1435 bits (724), Expect = 0.0
Identities = 787/803 (98%), Gaps = 4/803 (0%)
Strand = Plus / Minus
Query: 86 tttcgaaatatctggctctctgcttttggacaatatagctgccctcttacctccgaggcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4247 tttcgaaatatctggctctctgcttttggacaatatagctgccctcttacctccgaggcc 4188
Query: 146 tttcactcctccattataatcgctcccaactagaagattgaataatacaaatctatctct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4187 tttcactcctccattataatcgctcccaactagaagattgaataatacaaatctatctct 4128
Query: 206 gtcccaatcctttatgatatccaaatctacaaacgttacgaaacgttcattctgtttcga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4127 gtcccaatcctttatgatatccaaatctacaaacgttacgaaacgttcattctgtttcga 4068
Query: 266 ttttacaggagagtttgaggagtttgggagatcttgccagccatgttttgagtaattttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4067 ttttacaggagagtttgaggagtttgggagatcttgccagccatgttttgagtaattttt 4008
Query: 326 taatactttgcttgctccaaatgacaatacgtctgcatcattcgagagtacaaaatctac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4007 taatactttgcttgctccaaatgacaatacgtctgcatcattcgagagtacaaaatctac 3948
Query: 386 ctgccctaccaattgcaaaaacgcgcattgagcctcaccttctccaggcgcgttgatggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947 ctgccctaccaattgcaaaaacgcgcattgagcctcaccttctccaggcgcgttgatggt 3888
Query: 446 ttgtatattgaataatttgcagcattctataatataatcatcaacatagctcacgctgtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3887 ttgtatattgaataatttgcagcattctataatataatcatcaacatagctcacgctgtc 3828
Query: 506 atgattaaatcgattcattgatctcattaaccagtatgagtcccaaagtgttgcgacttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 atgattaaatcgattcattgatctcattaaccagtatgagtcccaaagtgttgcgacttt 3768
Query: 566 gcgcttttttcgcctttttccatctaacttgaacgtaccatcgaaaataataacaatgaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3767 gcgcttttttcgcctttttccatctaacttgaacgtaccatcgaaaataataacaatgaa 3708
Query: 626 acactggagatgtaacatctcctttaatttccttaaccaatttaacaatgtcttcgattt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3707 acactggagatgtaacatctcctttaatttccttaaccaatttaacaatgtcttcgattt 3648
Query: 686 gttttgtggttcatcgaaatacccgcattcgaataaccataagtatccatctatgccatt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 3647 gttttgtggttcatcgaaatacccgcattcgaataaccataagtatccatctatggcaat 3588
Query: 746 tcttgggaaccttncattcttttcaac-aactcttgcacaaatgtcttaaatgc-acacg 803
||||||||||||| ||||||| ||||| |||||| |||||| ||||||||| |||||
Sbjct: 3587 tcttgggaaccttccattcttctcaacaaactctgcaacaaattgcttaaatgcaacacg 3528
Query: 804 ggngtacgttgtactgggatatttggtttcataattcacctgat-ccatatgaccattta 862
|| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct: 3527 gg-gtacgttgtactgggatatttggttccataattcacttgatcccatatgaccattta 3469
Query: 863 ttaatctgtcagttcggcggacc 885
|| ||||||||||||||||||||
Sbjct: 3468 tttatctgtcagttcggcggacc 3446
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6125
Number of Sequences: 1807
Number of extensions: 6125
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)